Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0910.Seq
         (369 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n...    60   1e-08
UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3; ...    34   0.72 
UniRef50_A1VP16 Cluster: Peptidase C14, caspase catalytic subuni...    31   5.1  
UniRef50_UPI00015AE040 Cluster: hypothetical protein NEMVEDRAFT_...    31   6.7  
UniRef50_Q0QMQ1 Cluster: Polyketide synthase type I; n=1; Strept...    31   6.7  
UniRef50_A7RS43 Cluster: Predicted protein; n=3; Eumetazoa|Rep: ...    31   6.7  
UniRef50_Q3QYK6 Cluster: Putative DNA topoisomerase III; n=4; Xy...    31   8.9  
UniRef50_A0QK95 Cluster: Putative uncharacterized protein; n=2; ...    31   8.9  
UniRef50_Q652K5 Cluster: K-exchanger-like protein; n=1; Oryza sa...    31   8.9  

>UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n=1;
           Gallus gallus|Rep: UPI0000ECD483 UniRef100 entry -
           Gallus gallus
          Length = 103

 Score = 60.1 bits (139), Expect = 1e-08
 Identities = 35/65 (53%), Positives = 39/65 (60%)
 Frame = -1

Query: 195 GAPTARRTNATTSFLXATILVYXXXXXXXXXXXTRLALQLFLVKIFKVYSFRLRGLVRVP 16
           G P AR  + TTSFL A  L+Y           TRLALQ  LVK FKV SF+L+GL RV 
Sbjct: 30  GGPPARSQDPTTSFLTAATLIYAIGAGITAAAGTRLALQWILVKGFKVDSFQLQGLERVL 89

Query: 15  YRYFS 1
           Y YFS
Sbjct: 90  YCYFS 94


>UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 76

 Score = 34.3 bits (75), Expect = 0.72
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -3

Query: 121 SWNYRGCWHQTCP 83
           SWNYR CWHQT P
Sbjct: 7   SWNYRSCWHQTGP 19


>UniRef50_A1VP16 Cluster: Peptidase C14, caspase catalytic subunit
           p20; n=1; Polaromonas naphthalenivorans CJ2|Rep:
           Peptidase C14, caspase catalytic subunit p20 -
           Polaromonas naphthalenivorans (strain CJ2)
          Length = 562

 Score = 31.5 bits (68), Expect = 5.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 256 FRTPASXTICSANVSVSPRMRCTDSAAHKCNYELFXRNNFSIRYWS 119
           F++P         V+  PR+R  D AA + NY L  R+N+ +  W+
Sbjct: 150 FKSPEFAAQYDRPVNAPPRVRAADPAAVQANY-LANRSNYEVSQWT 194


>UniRef50_UPI00015AE040 Cluster: hypothetical protein
           NEMVEDRAFT_v1g155465; n=1; Nematostella vectensis|Rep:
           hypothetical protein NEMVEDRAFT_v1g155465 - Nematostella
           vectensis
          Length = 239

 Score = 31.1 bits (67), Expect = 6.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 247 PASXTICSANVSVSPRMRCTDSAAHKCNYEL 155
           PA  T C+ NV  S  ++C DS    CN E+
Sbjct: 184 PAGCTECACNVHGSASLQCDDSGVCPCNLEV 214


>UniRef50_Q0QMQ1 Cluster: Polyketide synthase type I; n=1;
            Streptomyces aculeolatus|Rep: Polyketide synthase type I
            - Streptomyces aculeolatus
          Length = 4308

 Score = 31.1 bits (67), Expect = 6.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 121  SWNYRGCWHQTCPPIVPR*NI*SVLIPITRPRKSP 17
            SW Y   WH   PP  PR  +    + +T P  SP
Sbjct: 3664 SWRYTVTWHPHTPPAAPRAVLTGTWLLLTPPEASP 3698


>UniRef50_A7RS43 Cluster: Predicted protein; n=3; Eumetazoa|Rep:
           Predicted protein - Nematostella vectensis
          Length = 183

 Score = 31.1 bits (67), Expect = 6.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 247 PASXTICSANVSVSPRMRCTDSAAHKCNYEL 155
           PA  T C+ NV  S  ++C DS    CN E+
Sbjct: 95  PAGCTECACNVHGSASLQCDDSGVCPCNLEV 125


>UniRef50_Q3QYK6 Cluster: Putative DNA topoisomerase III; n=4;
           Xylella fastidiosa|Rep: Putative DNA topoisomerase III -
           Xylella fastidiosa Ann-1
          Length = 193

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 20  TLTRPRNRNEYTLNILTRNNWR 85
           T+   + RN Y LN++TRN WR
Sbjct: 53  TILSEKERNIYDLNVVTRNGWR 74


>UniRef50_A0QK95 Cluster: Putative uncharacterized protein; n=2;
           Mycobacterium avium|Rep: Putative uncharacterized
           protein - Mycobacterium avium (strain 104)
          Length = 380

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 175 HKCNYELFXRNNFSIRYWSWN 113
           H C YE+F +    +R+W+WN
Sbjct: 159 HNCYYEIFDQLGPQLRWWAWN 179


>UniRef50_Q652K5 Cluster: K-exchanger-like protein; n=1; Oryza
           sativa (japonica cultivar-group)|Rep: K-exchanger-like
           protein - Oryza sativa subsp. japonica (Rice)
          Length = 198

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 154 KARSCICAPRCRCTASAVILTR 219
           ++  C+C PRCRC AS    TR
Sbjct: 147 RSHRCLCIPRCRCAASHPTPTR 168


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 311,599,241
Number of Sequences: 1657284
Number of extensions: 4894626
Number of successful extensions: 10035
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10030
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13647406432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)