Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0910.Seq
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0005 - 16886553-16886946,16887079-16887404                       28   2.6  
05_03_0451 - 14181990-14182221,14182522-14182621,14182814-14182892     27   6.1  

>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 148 RNNFSIRYWSWNYRGC 101
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


>05_03_0451 - 14181990-14182221,14182522-14182621,14182814-14182892
          Length = 136

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 198 IRGDTDTFAEHIVXEAGVLKTPVQYQN--PIAVLFG 299
           + G   + A H+V EA +L  P+Q     P+A L G
Sbjct: 101 VNGGISSMAAHVVKEAAMLTVPMQGMGSCPVAFLSG 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,426,768
Number of Sequences: 37544
Number of extensions: 136913
Number of successful extensions: 293
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)