Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0910.Seq
         (369 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.003
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.018
SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 31   0.29 
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)                  31   0.29 
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.67 
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.89 
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            29   1.2  
SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)              28   2.1  
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   2.7  
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)                    27   3.6  
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.6  
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.6  
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.6  

>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = +2

Query: 20  TLTRPRNRNEYTLNILTRNNWRASLXXXXXXXXXXXXYTKIVAXKKLVVAFVRRAVGAP 196
           T  +   R    ++++ R +WRASL            Y K+VA KKLVV F    VG P
Sbjct: 44  TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 35.1 bits (77), Expect = 0.018
 Identities = 19/42 (45%), Positives = 21/42 (50%)
 Frame = +2

Query: 71  RNNWRASLXXXXXXXXXXXXYTKIVAXKKLVVAFVRRAVGAP 196
           R +WRASL            Y K+VA KKLVV F    VG P
Sbjct: 14  RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55


>SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 205

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 247 PASXTICSANVSVSPRMRCTDSAAHKCNYEL 155
           PA  T C+ NV  S  ++C DS    CN E+
Sbjct: 153 PAGCTECACNVHGSASLQCDDSGVCPCNLEV 183


>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 683

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 247 PASXTICSANVSVSPRMRCTDSAAHKCNYEL 155
           PA  T C+ NV  S  ++C DS    CN E+
Sbjct: 195 PAGCTECACNVHGSASLQCDDSGVCPCNLEV 225


>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 746

 Score = 29.9 bits (64), Expect = 0.67
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 201 RGDTDTF-AEHIVXEAGVLKTPVQYQNPIAVLFGE 302
           +G+T TF AE +V EAG  K  V+Y+      F E
Sbjct: 108 KGETKTFFAEEVVNEAGRPKVKVEYKGETKTFFAE 142


>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 17/38 (44%), Positives = 18/38 (47%)
 Frame = +2

Query: 83  RASLXXXXXXXXXXXXYTKIVAXKKLVVAFVRRAVGAP 196
           RASL            Y K+VA KKLVV F    VG P
Sbjct: 5   RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 169 CNYELFXRNNFSIRYWSWNYRGCWH 95
           C   +  RN   +RYW W  R C H
Sbjct: 91  CEVTVIARNILPVRYWIWLSRKCGH 115


>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
          Length = 663

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 360 LARFEHSNLFK--VKXRAHLDTHRRAPR*DFDIEPEFLERRLHXRYA 226
           LAR+  + +F   ++  AHLDT RR P    D+    +   L  RYA
Sbjct: 580 LARWYQTGVFTPFLRAHAHLDTKRREPWLFDDVYKNVIRDALRTRYA 626


>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 17/42 (40%), Positives = 18/42 (42%)
 Frame = +2

Query: 71  RNNWRASLXXXXXXXXXXXXYTKIVAXKKLVVAFVRRAVGAP 196
           R    ASL            Y K+VA KKLVV F    VG P
Sbjct: 24  RERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 65


>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
          Length = 111

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 131 YTKIVAXKKLVVAFVRRAVGAP 196
           Y K+VA KKLVV F    VG P
Sbjct: 88  YIKVVAVKKLVVGFRDGTVGPP 109


>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 131 YTKIVAXKKLVVAFVRRAVGAP 196
           Y K+VA KKLVV F    VG P
Sbjct: 89  YIKVVAVKKLVVGFRDGTVGPP 110


>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 40

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 131 YTKIVAXKKLVVAFVRRAVGAP 196
           Y K+VA KKLVV F    VG P
Sbjct: 17  YIKVVAVKKLVVGFRDGTVGPP 38


>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 232 ICSANVSVSPRMRCTDSAAHKCNYELFXRNNFSIRYW-SWNY 110
           I S     S R+RCT S + KC       + F    W S+NY
Sbjct: 139 ISSGYYGRSYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180



 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 232 ICSANVSVSPRMRCTDSAAHKCNYELFXRNNFSIRYW 122
           I S     S R+RC+ S ++KC ++    + F    W
Sbjct: 294 ISSGYYGSSYRLRCSTSTSYKCRFDSIGDSAFQGNNW 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,979,636
Number of Sequences: 59808
Number of extensions: 167277
Number of successful extensions: 530
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)