BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0910.Seq (369 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.003 SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.018 SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0) 31 0.29 SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0) 31 0.29 SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.67 SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.89 SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5) 29 1.2 SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0) 28 2.1 SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7 SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2) 27 3.6 SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6 SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6 SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6 >SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 180 Score = 37.9 bits (84), Expect = 0.003 Identities = 21/59 (35%), Positives = 28/59 (47%) Frame = +2 Query: 20 TLTRPRNRNEYTLNILTRNNWRASLXXXXXXXXXXXXYTKIVAXKKLVVAFVRRAVGAP 196 T + R ++++ R +WRASL Y K+VA KKLVV F VG P Sbjct: 44 TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102 >SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 57 Score = 35.1 bits (77), Expect = 0.018 Identities = 19/42 (45%), Positives = 21/42 (50%) Frame = +2 Query: 71 RNNWRASLXXXXXXXXXXXXYTKIVAXKKLVVAFVRRAVGAP 196 R +WRASL Y K+VA KKLVV F VG P Sbjct: 14 RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55 >SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0) Length = 205 Score = 31.1 bits (67), Expect = 0.29 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -3 Query: 247 PASXTICSANVSVSPRMRCTDSAAHKCNYEL 155 PA T C+ NV S ++C DS CN E+ Sbjct: 153 PAGCTECACNVHGSASLQCDDSGVCPCNLEV 183 >SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0) Length = 683 Score = 31.1 bits (67), Expect = 0.29 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -3 Query: 247 PASXTICSANVSVSPRMRCTDSAAHKCNYEL 155 PA T C+ NV S ++C DS CN E+ Sbjct: 195 PAGCTECACNVHGSASLQCDDSGVCPCNLEV 225 >SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 746 Score = 29.9 bits (64), Expect = 0.67 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = +3 Query: 201 RGDTDTF-AEHIVXEAGVLKTPVQYQNPIAVLFGE 302 +G+T TF AE +V EAG K V+Y+ F E Sbjct: 108 KGETKTFFAEEVVNEAGRPKVKVEYKGETKTFFAE 142 >SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 120 Score = 29.5 bits (63), Expect = 0.89 Identities = 17/38 (44%), Positives = 18/38 (47%) Frame = +2 Query: 83 RASLXXXXXXXXXXXXYTKIVAXKKLVVAFVRRAVGAP 196 RASL Y K+VA KKLVV F VG P Sbjct: 5 RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42 >SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5) Length = 203 Score = 29.1 bits (62), Expect = 1.2 Identities = 10/25 (40%), Positives = 12/25 (48%) Frame = -3 Query: 169 CNYELFXRNNFSIRYWSWNYRGCWH 95 C + RN +RYW W R C H Sbjct: 91 CEVTVIARNILPVRYWIWLSRKCGH 115 >SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0) Length = 663 Score = 28.3 bits (60), Expect = 2.1 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Frame = -1 Query: 360 LARFEHSNLFK--VKXRAHLDTHRRAPR*DFDIEPEFLERRLHXRYA 226 LAR+ + +F ++ AHLDT RR P D+ + L RYA Sbjct: 580 LARWYQTGVFTPFLRAHAHLDTKRREPWLFDDVYKNVIRDALRTRYA 626 >SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 67 Score = 27.9 bits (59), Expect = 2.7 Identities = 17/42 (40%), Positives = 18/42 (42%) Frame = +2 Query: 71 RNNWRASLXXXXXXXXXXXXYTKIVAXKKLVVAFVRRAVGAP 196 R ASL Y K+VA KKLVV F VG P Sbjct: 24 RERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 65 >SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2) Length = 111 Score = 27.5 bits (58), Expect = 3.6 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = +2 Query: 131 YTKIVAXKKLVVAFVRRAVGAP 196 Y K+VA KKLVV F VG P Sbjct: 88 YIKVVAVKKLVVGFRDGTVGPP 109 >SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 112 Score = 27.5 bits (58), Expect = 3.6 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = +2 Query: 131 YTKIVAXKKLVVAFVRRAVGAP 196 Y K+VA KKLVV F VG P Sbjct: 89 YIKVVAVKKLVVGFRDGTVGPP 110 >SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 40 Score = 27.5 bits (58), Expect = 3.6 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = +2 Query: 131 YTKIVAXKKLVVAFVRRAVGAP 196 Y K+VA KKLVV F VG P Sbjct: 17 YIKVVAVKKLVVGFRDGTVGPP 38 >SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 397 Score = 27.5 bits (58), Expect = 3.6 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Frame = -3 Query: 232 ICSANVSVSPRMRCTDSAAHKCNYELFXRNNFSIRYW-SWNY 110 I S S R+RCT S + KC + F W S+NY Sbjct: 139 ISSGYYGRSYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180 Score = 26.2 bits (55), Expect = 8.3 Identities = 11/37 (29%), Positives = 18/37 (48%) Frame = -3 Query: 232 ICSANVSVSPRMRCTDSAAHKCNYELFXRNNFSIRYW 122 I S S R+RC+ S ++KC ++ + F W Sbjct: 294 ISSGYYGSSYRLRCSTSTSYKCRFDSIGDSAFQGNNW 330 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,979,636 Number of Sequences: 59808 Number of extensions: 167277 Number of successful extensions: 530 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 490 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 530 length of database: 16,821,457 effective HSP length: 74 effective length of database: 12,395,665 effective search space used: 594991920 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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