Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0910.Seq
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   3.2  
U80955-7|AAG01555.1|  116|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U97000-11|AAC47993.1|  321|Caenorhabditis elegans Serpentine rec...    26   9.7  
U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U23516-5|AAG38885.1|  449|Caenorhabditis elegans Glycosylation r...    26   9.7  
AF082010-1|AAD03022.1|  449|Caenorhabditis elegans UDP-N-acetylg...    26   9.7  
AF016416-5|AAB65277.1|  217|Caenorhabditis elegans Hypothetical ...    26   9.7  

>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 142 CCG*KARSCICAPRCRC 192
           CCG     C C PRC C
Sbjct: 79  CCGCGCGCCCCRPRCCC 95


>U80955-7|AAG01555.1|  116|Caenorhabditis elegans Hypothetical
           protein T04C9.2 protein.
          Length = 116

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +1

Query: 169 ICAPRCRCTASAVILTRLRSISSVKPAF*KLRFNIKILSRCSSVSVEVGAXFYFEQIRVL 348
           I A RCRC     +  R+ S SS        R     L   ++++V V   F+FE++R  
Sbjct: 34  IAASRCRCRRPPFLSIRIGSTSS--------RRQESSLPSINAITVVVVVAFFFEKMRKA 85

Query: 349 KAG*KCC 369
           +   + C
Sbjct: 86  RKNDELC 92


>U97000-11|AAC47993.1|  321|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 33 protein.
          Length = 321

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 145 NNFSIRYWSWNYRGCWHQTCPPIV 74
           N FS+ +WS  Y   W++  P ++
Sbjct: 113 NRFSMIFWSATYEKAWNRAFPFVI 136


>U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical
           protein F41G3.10 protein.
          Length = 198

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 243 LHXRYAPQTCQYHRGCGAPTARRTNATTSFL 151
           L  +  P+TC Y  G G  T  RT+ T + L
Sbjct: 128 LMRQQCPRTCGYCSGSGVVTTTRTSTTCADL 158


>U23516-5|AAG38885.1|  449|Caenorhabditis elegans Glycosylation
           related protein 13 protein.
          Length = 449

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 180 ALSVHRIRGDTDTFAEHIVXEAGVLKTPVQYQNPIAVLFGEC 305
           A  VH+IR +     +H++ E  V +   Q+++PI VL   C
Sbjct: 61  AEDVHKIRANRK--GKHVIMEEMVSQDLKQWKDPIPVLVFSC 100


>AF082010-1|AAD03022.1|  449|Caenorhabditis elegans
           UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
           2-N-acetylglucosaminyltransferase I protein.
          Length = 449

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 180 ALSVHRIRGDTDTFAEHIVXEAGVLKTPVQYQNPIAVLFGEC 305
           A  VH+IR +     +H++ E  V +   Q+++PI VL   C
Sbjct: 61  AEDVHKIRANRK--GKHVIMEEMVSQDLKQWKDPIPVLVFSC 100


>AF016416-5|AAB65277.1|  217|Caenorhabditis elegans Hypothetical
           protein F29A7.7 protein.
          Length = 217

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 253 RTPASXTICSANVSVSPRMRCTDSAAHKC 167
           + P S  IC+ +V + PR    D A + C
Sbjct: 95  KRPGSVVICTKSVIIKPRETTRDDAKNYC 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,282,251
Number of Sequences: 27780
Number of extensions: 118976
Number of successful extensions: 289
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)