Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0910.Seq
         (369 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   1.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   6.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.1  

>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 278 ILILNRSF*NAGFTDDMLRKRVSIT 204
           I+ L R+F N  F  DM+ K++ IT
Sbjct: 72  IMKLLRTFKNGNFDFDMIVKQLEIT 96


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 32  PRNRNEYTLNILTRNNW 82
           PRN +EY  N L    W
Sbjct: 368 PRNIDEYNNNDLDTKKW 384


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 332 SK*NXAPTSTLTEEHRDRILILNRSF*NAGFTDDMLRKRVSI 207
           S+ N  P+S     H D +++   S    GF   +L K V +
Sbjct: 20  SRGNAVPSSQRGNVHNDPLVVETTSGLVRGFPRTVLDKEVHV 61


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 332 SK*NXAPTSTLTEEHRDRILILNRSF*NAGFTDDMLRKRVSI 207
           S+ N  P+S     H D +++   S    GF   +L K V +
Sbjct: 20  SRGNAVPSSQRGNVHNDPLVVETTSGLVRGFPRTVLDKEVHV 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,542
Number of Sequences: 438
Number of extensions: 1546
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)