Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0909.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   3.5  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   3.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   3.5  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   4.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.1  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 159 QQLVNVDVVRRGYXER 206
           Q+L+NVD   RG+ ER
Sbjct: 238 QKLLNVDASIRGWIER 253


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 410 DXRKTYDWTSLNS 448
           D R TY WT +N+
Sbjct: 54  DERITYSWTEINA 66


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 410 DXRKTYDWTSLNS 448
           D R TY WT +N+
Sbjct: 54  DERITYSWTEINA 66


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/43 (23%), Positives = 15/43 (34%)
 Frame = -3

Query: 239 RVPTTLSGGLNTFXVTAAHNIYVHQLLALPSSNITCWTFLLIY 111
           R P    GG N F +           +  P SN   W + + +
Sbjct: 301 RAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYF 343


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 389 KRAYQDGAGEILDPLHIATNIETGHIHSGH 300
           K+  Q  A +  +  + ATN +  H H+GH
Sbjct: 299 KKNSQRQAAQQQNNNNAATNNQNHHHHAGH 328


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,181
Number of Sequences: 336
Number of extensions: 2429
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)