Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0909.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1...    28   0.90 
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    27   1.2  
SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.1  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   4.8  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    25   4.8  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   4.8  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    25   4.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   6.3  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   8.4  

>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 415

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -1

Query: 136 HVGHSYLYTCSRSISAIFNFSCAEM 62
           H GHSY    SRSI A   F CAE+
Sbjct: 206 HAGHSY---ASRSIDAASEFLCAEI 227


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 24  FSAQIVLANVCKYISAQEKLNIAEIER 104
           ++ Q  LA  C Y+SA++  N+AEI R
Sbjct: 442 YAMQNELAERCNYLSAEQLSNVAEILR 468


>SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 173 VHQLLALPSSNITCWTFLLIYLQSFYFCYI*LFLC*NVFADVCEHD 36
           +++L  +   N    TF+L+ L S  F  +  F C NV+A +   D
Sbjct: 58  IYRLTNMVEGNTKLRTFVLLILVSAVFLTLIEFPCRNVYAKISTED 103


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 305 HCGYDLFQCLLQCVRGPRFHQRRLGKLSYKYLSRCDXRKTYDWTSLN 445
           H  + L   L  CV  P+   RR   L   Y+ R    +TY  T LN
Sbjct: 841 HYCFTLDFILTDCVNSPKPLLRRASSLWLFYIVRYCEPQTYTMTRLN 887


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 6   LLVLDQFSAQIVLANVCKYISAQEKLNIAEI 98
           LL++ QF+A + L  +CK +  Q  L I ++
Sbjct: 271 LLIMIQFAAHVSLHTLCKALCGQACLMIRDL 301


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 100  NDCKYISKNVQHVIFDEGNAN-NW*T*MLCAAVTKNVFSPPDSVVGTRNQRIETIPLS 270
            N+CKY+  N+     D  N N N+   ++C   T      PDSV   R  R   +P+S
Sbjct: 951  NECKYVKSNITFSANDSANYNWNYVDQLICGFET----YLPDSVKYWR-ARFVLLPMS 1003


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 389 KRAYQDGAGEILDPLHIATNIET 321
           +R+Y  G GE L+ +HI  +I T
Sbjct: 368 ERSYDSGLGESLNNMHIGKSIAT 390


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +1

Query: 13   SLTSSQHKSCSQTSANTFQHKKS*I*QK*NDCKYISKNVQHVIFDEGNAN 162
            S+ SS++++    S+ T    KS +  K N  KYI KNVQ ++ ++   N
Sbjct: 1049 SVVSSEYENLLLISSQT---NKS-LEDKTNQLKYIEKNVQKLLDEKDQRN 1094


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 24  FSAQIVLANVCKYISAQEKLNIAEIER 104
           +  Q  LA  C Y+SA +  ++AEI R
Sbjct: 582 YEMQNELAEQCNYLSADQLSHVAEILR 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,130
Number of Sequences: 5004
Number of extensions: 37461
Number of successful extensions: 101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)