Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0909.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816...    28   3.6  
03_01_0534 + 3996479-3997458,3997938-3998265                           28   3.6  
09_04_0303 - 16505782-16506902,16507232-16507292                       28   4.8  
11_01_0725 - 5987706-5988126,5988610-5988902                           27   6.3  
02_05_1257 + 35286153-35286599,35286679-35287229,35287608-352878...    27   6.3  
03_01_0046 - 384444-384460,384649-384770,385144-385301,385379-38...    27   8.4  
02_05_0441 + 29040250-29040524,29040656-29040772,29040834-290411...    27   8.4  

>04_03_0092 +
           11079185-11079589,11081319-11081409,11081507-11081612,
           11081694-11081976,11082062-11082210,11083582-11083735,
           11083837-11084793
          Length = 714

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 143 LMKVTPTTGERRCCAPRLXRTYSVHQTALSGPEINGSK 256
           L+KVT T G     +P    TYSVH +AL   E+  +K
Sbjct: 293 LIKVTTTIGYG---SPNKANTYSVHGSALGTKEVEATK 327


>03_01_0534 + 3996479-3997458,3997938-3998265
          Length = 435

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 261 YGFDPLISGPDNAVWWTEYVLXNR 190
           +G   +   P NAVWW  Y +  R
Sbjct: 194 FGLSIVTYAPSNAVWWASYAMAQR 217


>09_04_0303 - 16505782-16506902,16507232-16507292
          Length = 393

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 261 YGFDPLISGPDNAVWWTEYVLXNR 190
           +G   L   P NAVWW  Y L  +
Sbjct: 238 FGMSILTYAPSNAVWWATYSLSQK 261


>11_01_0725 - 5987706-5988126,5988610-5988902
          Length = 237

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 386 SYKYLSRCDXRKTYDWTSLNSASSK 460
           +Y  LSR + R+ YDWT    A S+
Sbjct: 144 AYNVLSREESRRFYDWTLAQEAESR 168


>02_05_1257 +
           35286153-35286599,35286679-35287229,35287608-35287872,
           35288267-35288359,35288469-35288555,35288658-35288750
          Length = 511

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 285 FVFSSVATVDMTCFNVCCNV*GVQDFTSAVLVSSL-INIXLDVIXGKPMIGLH*IVLL 455
           FV  S+A+  M C  +C N+ G +      L +++ + +  ++  G+P   +H +V++
Sbjct: 317 FVKLSLASAVMLCLEICMNINGWEGMLFIGLNAAISVRVSNELGSGRPRATMHAVVVV 374


>03_01_0046 -
           384444-384460,384649-384770,385144-385301,385379-385479,
           385748-385823,385983-386093,386165-386356,386729-387024,
           388299-388497
          Length = 423

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 178 MLCAAVTKNVFSPPDSVVGTRNQRIETIPLSLIIAFLSFHQWP 306
           M+C  + KN      +      +R+    LSLI+ +  FHQ P
Sbjct: 118 MICREIVKNGTGSSKNHAIALPERVNPTSLSLILDYCRFHQVP 160


>02_05_0441 +
           29040250-29040524,29040656-29040772,29040834-29041143,
           29041863-29042018,29042332-29042483,29042783-29042936,
           29043897-29043998,29044168-29044209
          Length = 435

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 115 YTCSRSISAI-FNFSCAEMYLQTFASTICAENWSRTR 8
           Y CS S++A  + F    M +    +T C E+W+ TR
Sbjct: 241 YPCSLSLTAYSYFFGAVLMVISGVFATNCKEDWTLTR 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,447,542
Number of Sequences: 37544
Number of extensions: 231415
Number of successful extensions: 473
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)