BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0909.Seq (499 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_44502| Best HMM Match : UDPGT (HMM E-Value=2e-05) 40 0.002 SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.057 SB_44570| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.075 SB_44571| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23 SB_24817| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.40 SB_26422| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9 SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5 SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11) 27 8.6 >SB_44502| Best HMM Match : UDPGT (HMM E-Value=2e-05) Length = 261 Score = 39.5 bits (88), Expect = 0.002 Identities = 14/35 (40%), Positives = 23/35 (65%) Frame = -2 Query: 219 WWTEYVLXNRGAQHLRSPVVGVTFIKYYMLDILTY 115 +W EYV+ N G QHLR + F +Y++LD++ + Sbjct: 194 FWIEYVIRNNGTQHLRPSGRDLPFYQYFLLDVMLF 228 >SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 506 Score = 34.3 bits (75), Expect = 0.057 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = -2 Query: 240 SGPDNAVWWTEYVLXNRGAQHLRSPVVGVTFIKYYMLDILTYI 112 S A W EY L + HLR V +T+ +Y++LD++ ++ Sbjct: 403 SPTQEAADWIEYTLRHGNLTHLRPASVHLTWYQYFLLDVMLFM 445 >SB_44570| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 795 Score = 33.9 bits (74), Expect = 0.075 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = -2 Query: 240 SGPDNAVWWTEYVLXNRGAQHLRSPVVGVTFIKYYMLDILTYI 112 S + A W EY L + HLR + +T+ +Y++LD++ ++ Sbjct: 615 SPTEEAADWIEYTLRHGRLTHLRPASIHLTWYQYFLLDVMLFM 657 >SB_44571| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 428 Score = 32.3 bits (70), Expect = 0.23 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = -2 Query: 240 SGPDNAVWWTEYVLXNRGAQHLRSPVVGVTFIKYYMLD-ILTY 115 S + A W EY L +R HL V +T+ +Y++LD IL Y Sbjct: 336 SPTEEAADWIEYTLRHRRLTHLCPASVHLTWYQYFLLDCILAY 378 >SB_24817| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 556 Score = 31.5 bits (68), Expect = 0.40 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = -2 Query: 216 WTEYVLXNRGAQHLRSPVVGVTFIKYYMLDILTYI 112 W EY L + HLR V +++ +Y++LD++ ++ Sbjct: 490 WIEYTLRHGRLTHLRPASVHLSWYQYFLLDVMLFM 524 >SB_26422| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 536 Score = 27.9 bits (59), Expect = 4.9 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -2 Query: 216 WTEYVLXNRGAQHLRSPVVGVTFIKYYMLDILTYI 112 + EYVL HL+ + + F + YMLD++ I Sbjct: 472 FVEYVLAQGHLPHLKPRSLAMPFYQVYMLDVMAVI 506 >SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 685 Score = 27.5 bits (58), Expect = 6.5 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = +2 Query: 323 FQCLLQCVRGPRF-HQRRLGKLSYKYLSRCDXRK 421 F+CL + R P H ++ G +SY+Y RC +K Sbjct: 399 FECLFK--RKPNVSHLKKFGCVSYEYAPRCQRKK 430 >SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11) Length = 1166 Score = 27.1 bits (57), Expect = 8.6 Identities = 10/12 (83%), Positives = 11/12 (91%) Frame = -3 Query: 131 WTFLLIYLQSFY 96 WTFLL YLQSF+ Sbjct: 853 WTFLLSYLQSFF 864 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,654,633 Number of Sequences: 59808 Number of extensions: 282159 Number of successful extensions: 573 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 537 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 573 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1075029208 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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