Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0909.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44502| Best HMM Match : UDPGT (HMM E-Value=2e-05)                   40   0.002
SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.057
SB_44570| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.075
SB_44571| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.23 
SB_24817| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.40 
SB_26422| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.5  
SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11)                27   8.6  

>SB_44502| Best HMM Match : UDPGT (HMM E-Value=2e-05)
          Length = 261

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -2

Query: 219 WWTEYVLXNRGAQHLRSPVVGVTFIKYYMLDILTY 115
           +W EYV+ N G QHLR     + F +Y++LD++ +
Sbjct: 194 FWIEYVIRNNGTQHLRPSGRDLPFYQYFLLDVMLF 228


>SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 34.3 bits (75), Expect = 0.057
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 240 SGPDNAVWWTEYVLXNRGAQHLRSPVVGVTFIKYYMLDILTYI 112
           S    A  W EY L +    HLR   V +T+ +Y++LD++ ++
Sbjct: 403 SPTQEAADWIEYTLRHGNLTHLRPASVHLTWYQYFLLDVMLFM 445


>SB_44570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 795

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -2

Query: 240 SGPDNAVWWTEYVLXNRGAQHLRSPVVGVTFIKYYMLDILTYI 112
           S  + A  W EY L +    HLR   + +T+ +Y++LD++ ++
Sbjct: 615 SPTEEAADWIEYTLRHGRLTHLRPASIHLTWYQYFLLDVMLFM 657


>SB_44571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 240 SGPDNAVWWTEYVLXNRGAQHLRSPVVGVTFIKYYMLD-ILTY 115
           S  + A  W EY L +R   HL    V +T+ +Y++LD IL Y
Sbjct: 336 SPTEEAADWIEYTLRHRRLTHLCPASVHLTWYQYFLLDCILAY 378


>SB_24817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 556

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -2

Query: 216 WTEYVLXNRGAQHLRSPVVGVTFIKYYMLDILTYI 112
           W EY L +    HLR   V +++ +Y++LD++ ++
Sbjct: 490 WIEYTLRHGRLTHLRPASVHLSWYQYFLLDVMLFM 524


>SB_26422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 536

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 216 WTEYVLXNRGAQHLRSPVVGVTFIKYYMLDILTYI 112
           + EYVL      HL+   + + F + YMLD++  I
Sbjct: 472 FVEYVLAQGHLPHLKPRSLAMPFYQVYMLDVMAVI 506


>SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 685

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 323 FQCLLQCVRGPRF-HQRRLGKLSYKYLSRCDXRK 421
           F+CL +  R P   H ++ G +SY+Y  RC  +K
Sbjct: 399 FECLFK--RKPNVSHLKKFGCVSYEYAPRCQRKK 430


>SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11)
          Length = 1166

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -3

Query: 131 WTFLLIYLQSFY 96
           WTFLL YLQSF+
Sbjct: 853 WTFLLSYLQSFF 864


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,654,633
Number of Sequences: 59808
Number of extensions: 282159
Number of successful extensions: 573
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)