Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0909.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36752-5|CAA85328.2|  533|Caenorhabditis elegans Hypothetical pr...    32   0.27 
L15314-4|AAF99988.2|  618|Caenorhabditis elegans Hypothetical pr...    31   0.35 
Z70782-8|CAA94845.2|  536|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF067219-5|AAC17029.3|  241|Caenorhabditis elegans Hypothetical ...    27   7.6  

>Z36752-5|CAA85328.2|  533|Caenorhabditis elegans Hypothetical
           protein F35H8.6 protein.
          Length = 533

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 9/38 (23%), Positives = 24/38 (63%)
 Frame = -2

Query: 228 NAVWWTEYVLXNRGAQHLRSPVVGVTFIKYYMLDILTY 115
           +A +W E++  ++   H RS    + F++Y+++D++ +
Sbjct: 452 HAAFWVEFIERHQEVPHARSGADHLNFLQYFLVDVIAF 489


>L15314-4|AAF99988.2|  618|Caenorhabditis elegans Hypothetical
           protein K06H7.3 protein.
          Length = 618

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 184 CAAVTKNVFSPPDSVVGTRNQRIETIP 264
           CAA  +N+F   D+ + TR+ RI TIP
Sbjct: 264 CAAYHRNIFFEADAGIETRDDRIRTIP 290


>Z70782-8|CAA94845.2|  536|Caenorhabditis elegans Hypothetical
           protein R04B5.9 protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 231 DNAVWWTEYVLXNRGAQHLRSPVVGVTFIKYYMLDIL 121
           D  +  TE+V+ N G   L +    ++ IKYY LDI+
Sbjct: 462 DRFIKTTEWVIQNGGVHELLTEGRDLSIIKYYNLDII 498


>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical
           protein F09C3.1 protein.
          Length = 1391

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 365 QRRLGKLSYKYLSRCDXRKTYDWTSLN 445
           +RRL +++Y+YL RC+  +T+    LN
Sbjct: 34  ERRLNRIAYEYLCRCEEVRTWLSECLN 60


>AF067219-5|AAC17029.3|  241|Caenorhabditis elegans Hypothetical
           protein R12E2.8 protein.
          Length = 241

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 288 VFSSVATVDMTCFNVCCNV 344
           VFSSVA +  T F +CC V
Sbjct: 17  VFSSVAPISKTEFRLCCQV 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,898,496
Number of Sequences: 27780
Number of extensions: 211129
Number of successful extensions: 501
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)