Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0909.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30040.1 68414.m03673 gibberellin 2-oxidase / GA2-oxidase (GA...    29   1.7  
At5g26200.1 68418.m03118 mitochondrial substrate carrier family ...    28   3.0  
At1g72820.1 68414.m08419 mitochondrial substrate carrier family ...    28   3.0  
At1g48840.1 68414.m05468 expressed protein contains Pfam profile...    28   3.0  
At1g18390.1 68414.m02297 protein kinase family protein contains ...    28   3.0  
At3g04740.1 68416.m00510 expressed protein (SWP1)                      27   7.0  
At2g16890.2 68415.m01944 UDP-glucoronosyl/UDP-glucosyl transfera...    27   7.0  
At2g16890.1 68415.m01943 UDP-glucoronosyl/UDP-glucosyl transfera...    27   7.0  
At1g05920.1 68414.m00621 hypothetical protein contains Pfam prof...    27   9.3  

>At1g30040.1 68414.m03673 gibberellin 2-oxidase / GA2-oxidase
           (GA2OX2) identical to GI:4678368 ga2ox2
          Length = 341

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 261 YGFDPLISGPDNAVWWTEYVLXNRGAQHLRSPVVGVTF 148
           YG+     GP+  V W EY+L N   Q L SP     F
Sbjct: 94  YGYGNKRIGPNGDVGWIEYLLLNANPQ-LSSPKTSAVF 130


>At5g26200.1 68418.m03118 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 342

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 261 YGFDPLISGPDNAVWWTEYVLXNR 190
           +G   L   P NAVWW  Y L  +
Sbjct: 205 FGISILTYAPSNAVWWASYSLAQK 228


>At1g72820.1 68414.m08419 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 349

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 261 YGFDPLISGPDNAVWWTEYVLXNR 190
           +G   L   P NAVWW  Y +  R
Sbjct: 192 FGISILTYAPSNAVWWASYSVAQR 215


>At1g48840.1 68414.m05468 expressed protein contains Pfam profile:
           PF04842 plant protein of unknown function (DUF639)
          Length = 691

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -3

Query: 182 NIYVHQLLALPSSNITCWTFLLIY----LQSFYFCYI*LFL 72
           N+ V + L LP++ I  W   L+Y    L+SF FC +  F+
Sbjct: 490 NVAVMKELLLPATEIGNWLLSLVYWEDPLKSFVFCLLSTFI 530


>At1g18390.1 68414.m02297 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 605

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +2

Query: 287 CLFISGHCGYDLFQCLLQCVRGPRFHQRRLGKLSYKYLSRCDXRKTYD 430
           C+   G CG D  + +  C  GP+ H      L  + +S     K++D
Sbjct: 222 CITSGGRCGTDQQEFVCLCPDGPKLHDTCTNALLPRNISSDPSAKSFD 269


>At3g04740.1 68416.m00510 expressed protein (SWP1)
          Length = 1703

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 385 ELTKTALVKSWTPYTLQQTLKQVIST 308
           EL ++ LVKSW+P    QTL   +ST
Sbjct: 808 ELVQSELVKSWSP--ASQTLSTAVST 831


>At2g16890.2 68415.m01944 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 478

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 242 FRVPTTLSGGLNTFXVTAAHNIYVHQLLALPSS 144
           F +P  +S G+N++    + +++ H+L   P S
Sbjct: 138 FNIPRFVSYGMNSYSAAVSISVFKHELFTEPES 170


>At2g16890.1 68415.m01943 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 312

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 242 FRVPTTLSGGLNTFXVTAAHNIYVHQLLALPSS 144
           F +P  +S G+N++    + +++ H+L   P S
Sbjct: 138 FNIPRFVSYGMNSYSAAVSISVFKHELFTEPES 170


>At1g05920.1 68414.m00621 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 315

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 316 ISTVATDEKTKKR*LSLKVWFRSVDFGS 233
           ++    D++TKK  +  K WF + D GS
Sbjct: 234 VAAFLVDQRTKKWNMGFKQWFMTTDSGS 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,163,608
Number of Sequences: 28952
Number of extensions: 192705
Number of successful extensions: 451
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)