Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0908.Seq
(289 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 66 1e-12
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 41 4e-05
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 36 0.002
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 31 0.033
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 31 0.044
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 27 0.41
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 1.2
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 24 3.8
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 24 5.0
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 23 6.7
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 23 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 65.7 bits (153), Expect = 1e-12
Identities = 29/38 (76%), Positives = 32/38 (84%)
Frame = +3
Query: 72 DEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
+EE+AALV+DNGSGMCKAGF DDAP A PSIV RPR
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 39
Score = 35.9 bits (79), Expect = 0.001
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H G+MV MG KDSYV EA + LT
Sbjct: 36 GRPRHHGIMVGMGQKDSYVGDEAQSKRGILT 66
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 40.7 bits (91), Expect = 4e-05
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +3
Query: 78 EVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPRIXA 194
E A +V+DNG+G K G+ D+ P + PSIV RP + A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRA 40
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 35.5 bits (78), Expect = 0.002
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXR 179
+ +DNGSG KAGF DD P P+ V R
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGR 41
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 31.1 bits (67), Expect = 0.033
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPS 167
+EV+A+V+D GS + GF +D P PS
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPS 39
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 30.7 bits (66), Expect = 0.044
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIV 173
+++DNG+G K G+ +DAP P+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 27.5 bits (58), Expect = 0.41
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPS 167
EE+ +LV+D GS + G+ +++P PS
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS 38
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 1.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
LV+DNGS +AG+ + P ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 24.2 bits (50), Expect = 3.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 122 LAHTGAIVYYQRGNFFVAHLELVF 51
L TGAIV Y G FF + L+F
Sbjct: 56 LFRTGAIVAYILGMFFTSSFMLLF 79
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 23.8 bits (49), Expect = 5.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 129 NRPCTYRSHCLLPTRQ 82
NRP YRSH + TR+
Sbjct: 323 NRPSNYRSHSSMGTRR 338
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 23.4 bits (48), Expect = 6.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 116 HTGAIVYYQRGNFFVAHLELVFN 48
HT +V++Q NF + ELV N
Sbjct: 235 HTQTLVHFQSRNFHQWYFELVNN 257
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 23.0 bits (47), Expect = 8.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 15 NXSLFIIXTNLIKN*FKMCDEEVAALVVDNGSGMCK 122
N + I N +K + D+E L +D G MCK
Sbjct: 238 NSEMAISWFNCMKKTRYLHDQEFMHLDIDTGFSMCK 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 832,169
Number of Sequences: 5004
Number of extensions: 10399
Number of successful extensions: 29
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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