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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0908.Seq
         (289 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0450 - 21356877-21356942,21357482-21358095,21358173-213585...    56   3e-09
01_06_1455 + 37504175-37504231,37504357-37504750,37504865-375054...    55   1e-08
12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847,323...    53   4e-08
11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930,306...    53   4e-08
10_08_0597 + 19089616-19089675,19089789-19090182,19090451-190910...    53   4e-08
05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-32...    53   4e-08
03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137...    53   4e-08
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731...    53   4e-08
01_07_0285 - 42476767-42476832,42476990-42477603,42477821-424782...    53   4e-08
12_02_1282 + 27528159-27529148,27529549-27529614                       52   1e-07
08_01_0254 + 2078380-2078392,2078487-2078578,2079579-2079698,207...    41   2e-04
01_01_1170 - 9318332-9318461,9318551-9318613,9318694-9318744,931...    34   0.021
08_02_0441 - 17196352-17196536,17196780-17196906,17198018-171981...    33   0.049
08_01_0194 - 1603702-1603782,1603970-1604062,1604203-1604328,160...    31   0.20 
02_04_0473 + 23197294-23197340,23197443-23197680,23197792-231980...    29   0.80 
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238...    27   2.4  
04_04_1515 + 34117383-34117732,34117833-34117918,34118227-341182...    26   5.6  
08_02_1107 + 24357113-24357288,24357530-24357590,24358736-24359575     25   9.8  
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     25   9.8  
02_05_0477 - 29339649-29340253,29340880-29341492                       25   9.8  

>05_04_0450 -
           21356877-21356942,21357482-21358095,21358173-21358566,
           21358648-21358704
          Length = 376

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 25/40 (62%), Positives = 29/40 (72%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           M DE++  +V DNG+GM KAGF  DDAP A  PSIV RPR
Sbjct: 1   MADEDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 34.7 bits (76), Expect = 0.012
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KD+YV  EA  +   LT
Sbjct: 37  GRPRHTGVMVGMGQKDAYVGDEAQAKRGILT 67


>01_06_1455 +
           37504175-37504231,37504357-37504750,37504865-37505478,
           37506021-37506086
          Length = 376

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 24/40 (60%), Positives = 29/40 (72%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           M +E++  +V DNG+GM KAGF  DDAP A  PSIV RPR
Sbjct: 1   MAEEDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KD+YV  EA  +   LT
Sbjct: 37  GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 67


>12_01_0409 -
           3230853-3230918,3231372-3231994,3232454-3232847,
           3233000-3233059
          Length = 380

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 24/37 (64%), Positives = 27/37 (72%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           E++  LV DNG+GM KAGF  DDAP A  PSIV RPR
Sbjct: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KD+YV  EA  +   LT
Sbjct: 38  GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68


>11_01_0403 +
           3059650-3059709,3059807-3060200,3060275-3060930,
           3060979-3061044
          Length = 391

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 24/37 (64%), Positives = 27/37 (72%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           E++  LV DNG+GM KAGF  DDAP A  PSIV RPR
Sbjct: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KD+YV  EA  +   LT
Sbjct: 38  GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68


>10_08_0597 +
           19089616-19089675,19089789-19090182,19090451-19091064,
           19091160-19091225
          Length = 377

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 24/37 (64%), Positives = 27/37 (72%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           E++  LV DNG+GM KAGF  DDAP A  PSIV RPR
Sbjct: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KD+YV  EA  +   LT
Sbjct: 38  GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68


>05_01_0047 -
           323097-323162,323287-323900,324233-324626,324718-324777
          Length = 377

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 24/37 (64%), Positives = 27/37 (72%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           E++  LV DNG+GM KAGF  DDAP A  PSIV RPR
Sbjct: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KD+YV  EA  +   LT
Sbjct: 38  GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68


>03_06_0585 -
           34912159-34912224,34912634-34913247,34913350-34913734,
           34913824-34913883
          Length = 374

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 24/37 (64%), Positives = 27/37 (72%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           E++  LV DNG+GM KAGF  DDAP A  PSIV RPR
Sbjct: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KD+YV  EA  +   LT
Sbjct: 38  GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68


>03_05_0926 +
           28871800-28871859,28871943-28872336,28872586-28873199,
           28873281-28873346
          Length = 377

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 24/37 (64%), Positives = 27/37 (72%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           E++  LV DNG+GM KAGF  DDAP A  PSIV RPR
Sbjct: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KD+YV  EA  +   LT
Sbjct: 38  GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68


>01_07_0285 -
           42476767-42476832,42476990-42477603,42477821-42478214,
           42478301-42478360
          Length = 377

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 24/37 (64%), Positives = 27/37 (72%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           E++  LV DNG+GM KAGF  DDAP A  PSIV RPR
Sbjct: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KD+YV  EA  +   LT
Sbjct: 38  GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68


>12_02_1282 + 27528159-27529148,27529549-27529614
          Length = 351

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 23/37 (62%), Positives = 27/37 (72%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           +++  LV DNG+GM KAGF  DDAP A  PSIV RPR
Sbjct: 5   DDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KD+YV  EA  +   LT
Sbjct: 38  GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68


>08_01_0254 +
           2078380-2078392,2078487-2078578,2079579-2079698,
           2079924-2080097,2080184-2080257,2080847-2080927,
           2081306-2081366,2081437-2081486,2082278-2082332,
           2082599-2082676,2082757-2082810,2083703-2083756,
           2083846-2083906,2084229-2084280,2085118-2085184,
           2085393-2085452,2085546-2085608,2085752-2085814,
           2086337-2086401,2086620-2086688,2086742-2086847
          Length = 503

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSI 170
           +EV+A+V+D GS  CKAG+  DD P A  PS+
Sbjct: 5   DEVSAIVIDVGSYSCKAGYAGDDTPKAVFPSL 36


>01_01_1170 -
           9318332-9318461,9318551-9318613,9318694-9318744,
           9318837-9318921,9319005-9319068,9319139-9319340,
           9319808-9320502
          Length = 429

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 90  LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRP 182
           +V+DNG G+ KAGF  D  P A  P+ + +P
Sbjct: 8   VVLDNGGGLLKAGFGGDMNPTAVVPNCMAKP 38


>08_02_0441 -
           17196352-17196536,17196780-17196906,17198018-17198101,
           17198282-17198348,17198575-17198633,17199211-17199336,
           17199406-17199474,17199545-17199653,17199692-17199760,
           17199876-17199979,17200518-17200567,17200696-17200774,
           17200867-17200938,17201083-17201217,17201311-17201421,
           17202088-17202129
          Length = 495

 Score = 32.7 bits (71), Expect = 0.049
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 90  LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRP 182
           +V DNG+G  K GF  ++ P +  P +V RP
Sbjct: 7   VVCDNGTGYVKCGFAGENFPTSVFPCVVGRP 37


>08_01_0194 -
           1603702-1603782,1603970-1604062,1604203-1604328,
           1604403-1604513,1604989-1605108,1605665-1605757,
           1606024-1606157,1606503-1606530,1606821-1607075,
           1607167-1607401,1608147-1608193
          Length = 440

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 87  ALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173
           A+V+DNG+G  K GF  +  P    P++V
Sbjct: 8   AVVIDNGTGYSKLGFSGNSEPCFTIPTVV 36


>02_04_0473 +
           23197294-23197340,23197443-23197680,23197792-23198016,
           23198616-23198762,23198827-23198961,23199415-23199507,
           23199925-23200044,23200303-23200413,23200486-23200611,
           23200731-23200829,23201024-23201104
          Length = 473

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 87  ALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173
           A+V+DNG+G  K GF  +  P    P++V
Sbjct: 8   AVVIDNGTGYTKMGFAGNVEPCFITPTVV 36


>01_01_0292 -
           2387653-2387711,2388061-2388684,2388814-2389104,
           2389338-2389390,2390496-2390968,2391090-2391432,
           2391793-2391911,2392081-2392512,2392657-2392747,
           2392833-2392942,2393681-2393875,2394581-2394622,
           2395144-2395268,2395856-2395926,2396047-2396147
          Length = 1042

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 90  LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           +V+DNG+   + G+  +  P     +IV RPR
Sbjct: 22  IVIDNGASTFRIGWAGEAEPRVAFRNIVQRPR 53


>04_04_1515 +
           34117383-34117732,34117833-34117918,34118227-34118297,
           34118457-34118524,34118692-34118753,34119010-34119107,
           34119545-34119626,34119935-34120077,34120233-34120381,
           34120461-34120594,34120714-34120832,34120926-34121014,
           34121398-34121515
          Length = 522

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 87  ALVVDNGSGMCKAGFXXDDAP 149
           +++VD GSG CK G+    AP
Sbjct: 141 SIIVDGGSGYCKYGWSKYAAP 161


>08_02_1107 + 24357113-24357288,24357530-24357590,24358736-24359575
          Length = 358

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +3

Query: 93  VVDNGSGMCKAGFXXDDAPXAEXPSIVXRPRIXA*WSXWD 212
           VV  G+G    GF   +    E   +    RI A W  W+
Sbjct: 176 VVGTGAGFTTGGFVLSNPVTGEALHVPLPTRIGAPWRRWE 215


>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 100 TMAPVCARPVSXEMMLLAPSXPRS 171
           T+ PV  R +S    LL+PS PRS
Sbjct: 15  TLNPVVQRVLSRGKSLLSPSTPRS 38


>02_05_0477 - 29339649-29340253,29340880-29341492
          Length = 405

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173
           + VAALV  N  G+ +     +DA  A  PS++
Sbjct: 44  DAVAALVASNEDGVVEGEGEGEDAAEAPAPSVL 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,912,548
Number of Sequences: 37544
Number of extensions: 82469
Number of successful extensions: 181
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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