BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0908.Seq (289 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_04_0450 - 21356877-21356942,21357482-21358095,21358173-213585... 56 3e-09 01_06_1455 + 37504175-37504231,37504357-37504750,37504865-375054... 55 1e-08 12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847,323... 53 4e-08 11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930,306... 53 4e-08 10_08_0597 + 19089616-19089675,19089789-19090182,19090451-190910... 53 4e-08 05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-32... 53 4e-08 03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137... 53 4e-08 03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731... 53 4e-08 01_07_0285 - 42476767-42476832,42476990-42477603,42477821-424782... 53 4e-08 12_02_1282 + 27528159-27529148,27529549-27529614 52 1e-07 08_01_0254 + 2078380-2078392,2078487-2078578,2079579-2079698,207... 41 2e-04 01_01_1170 - 9318332-9318461,9318551-9318613,9318694-9318744,931... 34 0.021 08_02_0441 - 17196352-17196536,17196780-17196906,17198018-171981... 33 0.049 08_01_0194 - 1603702-1603782,1603970-1604062,1604203-1604328,160... 31 0.20 02_04_0473 + 23197294-23197340,23197443-23197680,23197792-231980... 29 0.80 01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238... 27 2.4 04_04_1515 + 34117383-34117732,34117833-34117918,34118227-341182... 26 5.6 08_02_1107 + 24357113-24357288,24357530-24357590,24358736-24359575 25 9.8 08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 25 9.8 02_05_0477 - 29339649-29340253,29340880-29341492 25 9.8 >05_04_0450 - 21356877-21356942,21357482-21358095,21358173-21358566, 21358648-21358704 Length = 376 Score = 56.4 bits (130), Expect = 3e-09 Identities = 25/40 (62%), Positives = 29/40 (72%) Frame = +3 Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 M DE++ +V DNG+GM KAGF DDAP A PSIV RPR Sbjct: 1 MADEDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 40 Score = 34.7 bits (76), Expect = 0.012 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KD+YV EA + LT Sbjct: 37 GRPRHTGVMVGMGQKDAYVGDEAQAKRGILT 67 >01_06_1455 + 37504175-37504231,37504357-37504750,37504865-37505478, 37506021-37506086 Length = 376 Score = 54.8 bits (126), Expect = 1e-08 Identities = 24/40 (60%), Positives = 29/40 (72%) Frame = +3 Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 M +E++ +V DNG+GM KAGF DDAP A PSIV RPR Sbjct: 1 MAEEDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 40 Score = 35.1 bits (77), Expect = 0.009 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KD+YV EA + LT Sbjct: 37 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 67 >12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847, 3233000-3233059 Length = 380 Score = 52.8 bits (121), Expect = 4e-08 Identities = 24/37 (64%), Positives = 27/37 (72%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 E++ LV DNG+GM KAGF DDAP A PSIV RPR Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41 Score = 35.1 bits (77), Expect = 0.009 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KD+YV EA + LT Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68 >11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930, 3060979-3061044 Length = 391 Score = 52.8 bits (121), Expect = 4e-08 Identities = 24/37 (64%), Positives = 27/37 (72%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 E++ LV DNG+GM KAGF DDAP A PSIV RPR Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41 Score = 35.1 bits (77), Expect = 0.009 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KD+YV EA + LT Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68 >10_08_0597 + 19089616-19089675,19089789-19090182,19090451-19091064, 19091160-19091225 Length = 377 Score = 52.8 bits (121), Expect = 4e-08 Identities = 24/37 (64%), Positives = 27/37 (72%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 E++ LV DNG+GM KAGF DDAP A PSIV RPR Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41 Score = 35.1 bits (77), Expect = 0.009 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KD+YV EA + LT Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68 >05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-324777 Length = 377 Score = 52.8 bits (121), Expect = 4e-08 Identities = 24/37 (64%), Positives = 27/37 (72%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 E++ LV DNG+GM KAGF DDAP A PSIV RPR Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41 Score = 35.1 bits (77), Expect = 0.009 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KD+YV EA + LT Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68 >03_06_0585 - 34912159-34912224,34912634-34913247,34913350-34913734, 34913824-34913883 Length = 374 Score = 52.8 bits (121), Expect = 4e-08 Identities = 24/37 (64%), Positives = 27/37 (72%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 E++ LV DNG+GM KAGF DDAP A PSIV RPR Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41 Score = 35.1 bits (77), Expect = 0.009 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KD+YV EA + LT Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68 >03_05_0926 + 28871800-28871859,28871943-28872336,28872586-28873199, 28873281-28873346 Length = 377 Score = 52.8 bits (121), Expect = 4e-08 Identities = 24/37 (64%), Positives = 27/37 (72%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 E++ LV DNG+GM KAGF DDAP A PSIV RPR Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41 Score = 35.1 bits (77), Expect = 0.009 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KD+YV EA + LT Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68 >01_07_0285 - 42476767-42476832,42476990-42477603,42477821-42478214, 42478301-42478360 Length = 377 Score = 52.8 bits (121), Expect = 4e-08 Identities = 24/37 (64%), Positives = 27/37 (72%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 E++ LV DNG+GM KAGF DDAP A PSIV RPR Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41 Score = 35.1 bits (77), Expect = 0.009 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KD+YV EA + LT Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68 >12_02_1282 + 27528159-27529148,27529549-27529614 Length = 351 Score = 51.6 bits (118), Expect = 1e-07 Identities = 23/37 (62%), Positives = 27/37 (72%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 +++ LV DNG+GM KAGF DDAP A PSIV RPR Sbjct: 5 DDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41 Score = 35.1 bits (77), Expect = 0.009 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KD+YV EA + LT Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68 >08_01_0254 + 2078380-2078392,2078487-2078578,2079579-2079698, 2079924-2080097,2080184-2080257,2080847-2080927, 2081306-2081366,2081437-2081486,2082278-2082332, 2082599-2082676,2082757-2082810,2083703-2083756, 2083846-2083906,2084229-2084280,2085118-2085184, 2085393-2085452,2085546-2085608,2085752-2085814, 2086337-2086401,2086620-2086688,2086742-2086847 Length = 503 Score = 40.7 bits (91), Expect = 2e-04 Identities = 17/32 (53%), Positives = 23/32 (71%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSI 170 +EV+A+V+D GS CKAG+ DD P A PS+ Sbjct: 5 DEVSAIVIDVGSYSCKAGYAGDDTPKAVFPSL 36 >01_01_1170 - 9318332-9318461,9318551-9318613,9318694-9318744, 9318837-9318921,9319005-9319068,9319139-9319340, 9319808-9320502 Length = 429 Score = 33.9 bits (74), Expect = 0.021 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +3 Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRP 182 +V+DNG G+ KAGF D P A P+ + +P Sbjct: 8 VVLDNGGGLLKAGFGGDMNPTAVVPNCMAKP 38 >08_02_0441 - 17196352-17196536,17196780-17196906,17198018-17198101, 17198282-17198348,17198575-17198633,17199211-17199336, 17199406-17199474,17199545-17199653,17199692-17199760, 17199876-17199979,17200518-17200567,17200696-17200774, 17200867-17200938,17201083-17201217,17201311-17201421, 17202088-17202129 Length = 495 Score = 32.7 bits (71), Expect = 0.049 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +3 Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRP 182 +V DNG+G K GF ++ P + P +V RP Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRP 37 >08_01_0194 - 1603702-1603782,1603970-1604062,1604203-1604328, 1604403-1604513,1604989-1605108,1605665-1605757, 1606024-1606157,1606503-1606530,1606821-1607075, 1607167-1607401,1608147-1608193 Length = 440 Score = 30.7 bits (66), Expect = 0.20 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 87 ALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173 A+V+DNG+G K GF + P P++V Sbjct: 8 AVVIDNGTGYSKLGFSGNSEPCFTIPTVV 36 >02_04_0473 + 23197294-23197340,23197443-23197680,23197792-23198016, 23198616-23198762,23198827-23198961,23199415-23199507, 23199925-23200044,23200303-23200413,23200486-23200611, 23200731-23200829,23201024-23201104 Length = 473 Score = 28.7 bits (61), Expect = 0.80 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 87 ALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173 A+V+DNG+G K GF + P P++V Sbjct: 8 AVVIDNGTGYTKMGFAGNVEPCFITPTVV 36 >01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104, 2389338-2389390,2390496-2390968,2391090-2391432, 2391793-2391911,2392081-2392512,2392657-2392747, 2392833-2392942,2393681-2393875,2394581-2394622, 2395144-2395268,2395856-2395926,2396047-2396147 Length = 1042 Score = 27.1 bits (57), Expect = 2.4 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +3 Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 +V+DNG+ + G+ + P +IV RPR Sbjct: 22 IVIDNGASTFRIGWAGEAEPRVAFRNIVQRPR 53 >04_04_1515 + 34117383-34117732,34117833-34117918,34118227-34118297, 34118457-34118524,34118692-34118753,34119010-34119107, 34119545-34119626,34119935-34120077,34120233-34120381, 34120461-34120594,34120714-34120832,34120926-34121014, 34121398-34121515 Length = 522 Score = 25.8 bits (54), Expect = 5.6 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 87 ALVVDNGSGMCKAGFXXDDAP 149 +++VD GSG CK G+ AP Sbjct: 141 SIIVDGGSGYCKYGWSKYAAP 161 >08_02_1107 + 24357113-24357288,24357530-24357590,24358736-24359575 Length = 358 Score = 25.0 bits (52), Expect = 9.8 Identities = 12/40 (30%), Positives = 16/40 (40%) Frame = +3 Query: 93 VVDNGSGMCKAGFXXDDAPXAEXPSIVXRPRIXA*WSXWD 212 VV G+G GF + E + RI A W W+ Sbjct: 176 VVGTGAGFTTGGFVLSNPVTGEALHVPLPTRIGAPWRRWE 215 >08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 Length = 430 Score = 25.0 bits (52), Expect = 9.8 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +1 Query: 100 TMAPVCARPVSXEMMLLAPSXPRS 171 T+ PV R +S LL+PS PRS Sbjct: 15 TLNPVVQRVLSRGKSLLSPSTPRS 38 >02_05_0477 - 29339649-29340253,29340880-29341492 Length = 405 Score = 25.0 bits (52), Expect = 9.8 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173 + VAALV N G+ + +DA A PS++ Sbjct: 44 DAVAALVASNEDGVVEGEGEGEDAAEAPAPSVL 76 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,912,548 Number of Sequences: 37544 Number of extensions: 82469 Number of successful extensions: 181 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 171 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 181 length of database: 14,793,348 effective HSP length: 70 effective length of database: 12,165,268 effective search space used: 304131700 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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