Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0908.Seq
(289 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0450 - 21356877-21356942,21357482-21358095,21358173-213585... 56 3e-09
01_06_1455 + 37504175-37504231,37504357-37504750,37504865-375054... 55 1e-08
12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847,323... 53 4e-08
11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930,306... 53 4e-08
10_08_0597 + 19089616-19089675,19089789-19090182,19090451-190910... 53 4e-08
05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-32... 53 4e-08
03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137... 53 4e-08
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731... 53 4e-08
01_07_0285 - 42476767-42476832,42476990-42477603,42477821-424782... 53 4e-08
12_02_1282 + 27528159-27529148,27529549-27529614 52 1e-07
08_01_0254 + 2078380-2078392,2078487-2078578,2079579-2079698,207... 41 2e-04
01_01_1170 - 9318332-9318461,9318551-9318613,9318694-9318744,931... 34 0.021
08_02_0441 - 17196352-17196536,17196780-17196906,17198018-171981... 33 0.049
08_01_0194 - 1603702-1603782,1603970-1604062,1604203-1604328,160... 31 0.20
02_04_0473 + 23197294-23197340,23197443-23197680,23197792-231980... 29 0.80
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238... 27 2.4
04_04_1515 + 34117383-34117732,34117833-34117918,34118227-341182... 26 5.6
08_02_1107 + 24357113-24357288,24357530-24357590,24358736-24359575 25 9.8
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 25 9.8
02_05_0477 - 29339649-29340253,29340880-29341492 25 9.8
>05_04_0450 -
21356877-21356942,21357482-21358095,21358173-21358566,
21358648-21358704
Length = 376
Score = 56.4 bits (130), Expect = 3e-09
Identities = 25/40 (62%), Positives = 29/40 (72%)
Frame = +3
Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
M DE++ +V DNG+GM KAGF DDAP A PSIV RPR
Sbjct: 1 MADEDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 40
Score = 34.7 bits (76), Expect = 0.012
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KD+YV EA + LT
Sbjct: 37 GRPRHTGVMVGMGQKDAYVGDEAQAKRGILT 67
>01_06_1455 +
37504175-37504231,37504357-37504750,37504865-37505478,
37506021-37506086
Length = 376
Score = 54.8 bits (126), Expect = 1e-08
Identities = 24/40 (60%), Positives = 29/40 (72%)
Frame = +3
Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
M +E++ +V DNG+GM KAGF DDAP A PSIV RPR
Sbjct: 1 MAEEDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 40
Score = 35.1 bits (77), Expect = 0.009
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KD+YV EA + LT
Sbjct: 37 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 67
>12_01_0409 -
3230853-3230918,3231372-3231994,3232454-3232847,
3233000-3233059
Length = 380
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
E++ LV DNG+GM KAGF DDAP A PSIV RPR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
Score = 35.1 bits (77), Expect = 0.009
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KD+YV EA + LT
Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68
>11_01_0403 +
3059650-3059709,3059807-3060200,3060275-3060930,
3060979-3061044
Length = 391
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
E++ LV DNG+GM KAGF DDAP A PSIV RPR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
Score = 35.1 bits (77), Expect = 0.009
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KD+YV EA + LT
Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68
>10_08_0597 +
19089616-19089675,19089789-19090182,19090451-19091064,
19091160-19091225
Length = 377
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
E++ LV DNG+GM KAGF DDAP A PSIV RPR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
Score = 35.1 bits (77), Expect = 0.009
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KD+YV EA + LT
Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68
>05_01_0047 -
323097-323162,323287-323900,324233-324626,324718-324777
Length = 377
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
E++ LV DNG+GM KAGF DDAP A PSIV RPR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
Score = 35.1 bits (77), Expect = 0.009
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KD+YV EA + LT
Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68
>03_06_0585 -
34912159-34912224,34912634-34913247,34913350-34913734,
34913824-34913883
Length = 374
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
E++ LV DNG+GM KAGF DDAP A PSIV RPR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
Score = 35.1 bits (77), Expect = 0.009
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KD+YV EA + LT
Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68
>03_05_0926 +
28871800-28871859,28871943-28872336,28872586-28873199,
28873281-28873346
Length = 377
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
E++ LV DNG+GM KAGF DDAP A PSIV RPR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
Score = 35.1 bits (77), Expect = 0.009
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KD+YV EA + LT
Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68
>01_07_0285 -
42476767-42476832,42476990-42477603,42477821-42478214,
42478301-42478360
Length = 377
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
E++ LV DNG+GM KAGF DDAP A PSIV RPR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
Score = 35.1 bits (77), Expect = 0.009
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KD+YV EA + LT
Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68
>12_02_1282 + 27528159-27529148,27529549-27529614
Length = 351
Score = 51.6 bits (118), Expect = 1e-07
Identities = 23/37 (62%), Positives = 27/37 (72%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
+++ LV DNG+GM KAGF DDAP A PSIV RPR
Sbjct: 5 DDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
Score = 35.1 bits (77), Expect = 0.009
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KD+YV EA + LT
Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68
>08_01_0254 +
2078380-2078392,2078487-2078578,2079579-2079698,
2079924-2080097,2080184-2080257,2080847-2080927,
2081306-2081366,2081437-2081486,2082278-2082332,
2082599-2082676,2082757-2082810,2083703-2083756,
2083846-2083906,2084229-2084280,2085118-2085184,
2085393-2085452,2085546-2085608,2085752-2085814,
2086337-2086401,2086620-2086688,2086742-2086847
Length = 503
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSI 170
+EV+A+V+D GS CKAG+ DD P A PS+
Sbjct: 5 DEVSAIVIDVGSYSCKAGYAGDDTPKAVFPSL 36
>01_01_1170 -
9318332-9318461,9318551-9318613,9318694-9318744,
9318837-9318921,9319005-9319068,9319139-9319340,
9319808-9320502
Length = 429
Score = 33.9 bits (74), Expect = 0.021
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRP 182
+V+DNG G+ KAGF D P A P+ + +P
Sbjct: 8 VVLDNGGGLLKAGFGGDMNPTAVVPNCMAKP 38
>08_02_0441 -
17196352-17196536,17196780-17196906,17198018-17198101,
17198282-17198348,17198575-17198633,17199211-17199336,
17199406-17199474,17199545-17199653,17199692-17199760,
17199876-17199979,17200518-17200567,17200696-17200774,
17200867-17200938,17201083-17201217,17201311-17201421,
17202088-17202129
Length = 495
Score = 32.7 bits (71), Expect = 0.049
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRP 182
+V DNG+G K GF ++ P + P +V RP
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRP 37
>08_01_0194 -
1603702-1603782,1603970-1604062,1604203-1604328,
1604403-1604513,1604989-1605108,1605665-1605757,
1606024-1606157,1606503-1606530,1606821-1607075,
1607167-1607401,1608147-1608193
Length = 440
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 87 ALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173
A+V+DNG+G K GF + P P++V
Sbjct: 8 AVVIDNGTGYSKLGFSGNSEPCFTIPTVV 36
>02_04_0473 +
23197294-23197340,23197443-23197680,23197792-23198016,
23198616-23198762,23198827-23198961,23199415-23199507,
23199925-23200044,23200303-23200413,23200486-23200611,
23200731-23200829,23201024-23201104
Length = 473
Score = 28.7 bits (61), Expect = 0.80
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 87 ALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173
A+V+DNG+G K GF + P P++V
Sbjct: 8 AVVIDNGTGYTKMGFAGNVEPCFITPTVV 36
>01_01_0292 -
2387653-2387711,2388061-2388684,2388814-2389104,
2389338-2389390,2390496-2390968,2391090-2391432,
2391793-2391911,2392081-2392512,2392657-2392747,
2392833-2392942,2393681-2393875,2394581-2394622,
2395144-2395268,2395856-2395926,2396047-2396147
Length = 1042
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
+V+DNG+ + G+ + P +IV RPR
Sbjct: 22 IVIDNGASTFRIGWAGEAEPRVAFRNIVQRPR 53
>04_04_1515 +
34117383-34117732,34117833-34117918,34118227-34118297,
34118457-34118524,34118692-34118753,34119010-34119107,
34119545-34119626,34119935-34120077,34120233-34120381,
34120461-34120594,34120714-34120832,34120926-34121014,
34121398-34121515
Length = 522
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 87 ALVVDNGSGMCKAGFXXDDAP 149
+++VD GSG CK G+ AP
Sbjct: 141 SIIVDGGSGYCKYGWSKYAAP 161
>08_02_1107 + 24357113-24357288,24357530-24357590,24358736-24359575
Length = 358
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +3
Query: 93 VVDNGSGMCKAGFXXDDAPXAEXPSIVXRPRIXA*WSXWD 212
VV G+G GF + E + RI A W W+
Sbjct: 176 VVGTGAGFTTGGFVLSNPVTGEALHVPLPTRIGAPWRRWE 215
>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
Length = 430
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 100 TMAPVCARPVSXEMMLLAPSXPRS 171
T+ PV R +S LL+PS PRS
Sbjct: 15 TLNPVVQRVLSRGKSLLSPSTPRS 38
>02_05_0477 - 29339649-29340253,29340880-29341492
Length = 405
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173
+ VAALV N G+ + +DA A PS++
Sbjct: 44 DAVAALVASNEDGVVEGEGEGEDAAEAPAPSVL 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,912,548
Number of Sequences: 37544
Number of extensions: 82469
Number of successful extensions: 181
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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