BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0908.Seq (289 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_56628| Best HMM Match : Actin (HMM E-Value=0) 71 1e-13 SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 3e-12 SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 3e-12 SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 8e-12 SB_56| Best HMM Match : Actin (HMM E-Value=0) 65 8e-12 SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 2e-11 SB_54| Best HMM Match : Actin (HMM E-Value=0) 45 9e-06 SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 40 3e-04 SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.004 SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 36 0.005 SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.089 SB_34833| Best HMM Match : E6 (HMM E-Value=7.2) 26 5.8 >SB_56628| Best HMM Match : Actin (HMM E-Value=0) Length = 376 Score = 71.3 bits (167), Expect = 1e-13 Identities = 32/40 (80%), Positives = 34/40 (85%) Frame = +3 Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 MCD++VAALVVDNGSGMCKAGF DDAP A PSIV RPR Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67 >SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 376 Score = 66.9 bits (156), Expect = 3e-12 Identities = 31/40 (77%), Positives = 33/40 (82%) Frame = +3 Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 M D+E+AALVVDNGSGMCKAGF DDAP A PSIV RPR Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67 >SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 349 Score = 66.9 bits (156), Expect = 3e-12 Identities = 29/40 (72%), Positives = 33/40 (82%) Frame = +3 Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 M D+++AALV+DNGSGMCKAGF DDAP A PSIV RPR Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67 >SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 338 Score = 65.3 bits (152), Expect = 8e-12 Identities = 29/38 (76%), Positives = 32/38 (84%) Frame = +3 Query: 72 DEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 D++VAALV+DNGSGMCKAGF DDAP A PSIV RPR Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 39 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66 >SB_56| Best HMM Match : Actin (HMM E-Value=0) Length = 375 Score = 65.3 bits (152), Expect = 8e-12 Identities = 30/38 (78%), Positives = 32/38 (84%) Frame = +3 Query: 72 DEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 ++EVAALVVDNGSGMCKAGF DDAP A PSIV RPR Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 39 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66 >SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 375 Score = 64.1 bits (149), Expect = 2e-11 Identities = 29/38 (76%), Positives = 32/38 (84%) Frame = +3 Query: 72 DEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 +++VAALVVDNGSGMCKAGF DDAP A PSIV RPR Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 39 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66 >SB_54| Best HMM Match : Actin (HMM E-Value=0) Length = 2486 Score = 45.2 bits (102), Expect = 9e-06 Identities = 18/32 (56%), Positives = 23/32 (71%) Frame = +3 Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 +V+DNGSG CKAG D++P P+IV RPR Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPR 2128 >SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) Length = 1392 Score = 40.3 bits (90), Expect = 3e-04 Identities = 20/37 (54%), Positives = 21/37 (56%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 E LV+D GS M K GF DDAP P IV RPR Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPR 1390 >SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 198 Score = 36.3 bits (80), Expect = 0.004 Identities = 18/33 (54%), Positives = 22/33 (66%) Frame = -3 Query: 170 DRGXLGARSIISXETGLAHTGAIVYYQRGNFFV 72 D G G+ SI+S ETGLAHTGAI+ Q + V Sbjct: 7 DGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39 >SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) Length = 921 Score = 35.9 bits (79), Expect = 0.005 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +3 Query: 60 FKMCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 FK+ A+V+DNG G+ K GF D P P++V P+ Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQ 734 >SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 411 Score = 31.9 bits (69), Expect = 0.089 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +3 Query: 84 AALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPRI 188 + +V DNG+G K G+ + P PS+V RP I Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPII 41 >SB_34833| Best HMM Match : E6 (HMM E-Value=7.2) Length = 135 Score = 25.8 bits (54), Expect = 5.8 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = -2 Query: 138 LXRNRPCTYRSHCLLP 91 L R R C YRSH LLP Sbjct: 52 LFRGRYCQYRSHNLLP 67 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,772,796 Number of Sequences: 59808 Number of extensions: 97246 Number of successful extensions: 164 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 148 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 164 length of database: 16,821,457 effective HSP length: 70 effective length of database: 12,634,897 effective search space used: 315872425 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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