Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0908.Seq
         (289 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56628| Best HMM Match : Actin (HMM E-Value=0)                       71   1e-13
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   3e-12
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)               67   3e-12
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   8e-12
SB_56| Best HMM Match : Actin (HMM E-Value=0)                          65   8e-12
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)               64   2e-11
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          45   9e-06
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)                  40   3e-04
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.004
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)                 36   0.005
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.089
SB_34833| Best HMM Match : E6 (HMM E-Value=7.2)                        26   5.8  

>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 32/40 (80%), Positives = 34/40 (85%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           MCD++VAALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 1   MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 37  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67


>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 31/40 (77%), Positives = 33/40 (82%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           M D+E+AALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 1   MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 37  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67


>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           M D+++AALV+DNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 1   MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 37  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 65.3 bits (152), Expect = 8e-12
 Identities = 29/38 (76%), Positives = 32/38 (84%)
 Frame = +3

Query: 72  DEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           D++VAALV+DNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 2   DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 39



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 36  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score = 65.3 bits (152), Expect = 8e-12
 Identities = 30/38 (78%), Positives = 32/38 (84%)
 Frame = +3

Query: 72  DEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           ++EVAALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 2   EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 39



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 36  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 29/38 (76%), Positives = 32/38 (84%)
 Frame = +3

Query: 72  DEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           +++VAALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 2   EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 39



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 36  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +3

Query: 90   LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
            +V+DNGSG CKAG   D++P    P+IV RPR
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPR 2128


>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
          Length = 1392

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 20/37 (54%), Positives = 21/37 (56%)
 Frame = +3

Query: 75   EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
            E    LV+D GS M K GF  DDAP    P IV RPR
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPR 1390


>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = -3

Query: 170 DRGXLGARSIISXETGLAHTGAIVYYQRGNFFV 72
           D G  G+ SI+S ETGLAHTGAI+  Q  +  V
Sbjct: 7   DGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39


>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
          Length = 921

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 60  FKMCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           FK+      A+V+DNG G+ K GF  D  P    P++V  P+
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQ 734


>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 31.9 bits (69), Expect = 0.089
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 84  AALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPRI 188
           + +V DNG+G  K G+   + P    PS+V RP I
Sbjct: 7   SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPII 41


>SB_34833| Best HMM Match : E6 (HMM E-Value=7.2)
          Length = 135

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 138 LXRNRPCTYRSHCLLP 91
           L R R C YRSH LLP
Sbjct: 52  LFRGRYCQYRSHNLLP 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,772,796
Number of Sequences: 59808
Number of extensions: 97246
Number of successful extensions: 164
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 315872425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)