Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0908.Seq
         (289 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.          74   1e-15
U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.          74   1e-15
U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.          74   1e-15
CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.           68   6e-14
AY330181-1|AAQ16287.1|  156|Anopheles gambiae odorant-binding pr...    23   1.7  
AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.          22   5.2  
DQ139954-1|ABA29475.1|  451|Anopheles gambiae protein O-fucosylt...    21   6.9  

>U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 73.7 bits (173), Expect = 1e-15
 Identities = 34/40 (85%), Positives = 34/40 (85%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           MCDEEVAALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 1   MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 37  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67


>U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 73.7 bits (173), Expect = 1e-15
 Identities = 34/40 (85%), Positives = 34/40 (85%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           MCDEEVAALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 1   MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 37  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67


>U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 73.7 bits (173), Expect = 1e-15
 Identities = 34/40 (85%), Positives = 34/40 (85%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           MCDEEVAALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 1   MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 37  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67


>CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.
          Length = 376

 Score = 68.1 bits (159), Expect = 6e-14
 Identities = 30/40 (75%), Positives = 32/40 (80%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           MCD++  ALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 1   MCDDDAGALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 35.1 bits (77), Expect = 5e-04
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KD+YV  EA  +   LT
Sbjct: 37  GRPRHQGVMVGMGNKDAYVGDEAQSKRGILT 67


>AY330181-1|AAQ16287.1|  156|Anopheles gambiae odorant-binding
           protein AgamOBP55 protein.
          Length = 156

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 60  FKMCDEEVAALVVDNGSGMC 119
           +++C E+ A   +DNG+ MC
Sbjct: 42  YRVCHEQHATPQMDNGTVMC 61


>AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.
          Length = 356

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 137 SXETGLAHTGAIVYYQRGNFFVAHLEL 57
           S  TGLAH    +   RG   +AH +L
Sbjct: 162 SIATGLAHLHMDIVGTRGKPAIAHRDL 188


>DQ139954-1|ABA29475.1|  451|Anopheles gambiae protein
           O-fucosyltransferase 2 protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 116 HTGAIVYYQRGNF 78
           H GA+ Y+  GNF
Sbjct: 185 HDGALAYFGYGNF 197


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,983
Number of Sequences: 2352
Number of extensions: 3227
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 55
effective length of database: 434,619
effective search space used: 17384760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)