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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0908.Seq
         (289 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81584-6|CAB04678.1|  376|Caenorhabditis elegans Hypothetical pr...    73   4e-14
Z81584-4|CAB04676.1|  376|Caenorhabditis elegans Hypothetical pr...    73   4e-14
X16799-1|CAA34720.1|  376|Caenorhabditis elegans actin protein.        73   4e-14
X16798-1|CAA34719.1|  375|Caenorhabditis elegans actin protein.        73   4e-14
X16796-1|CAA34717.1|  376|Caenorhabditis elegans actin protein.        73   4e-14
U64601-5|AAB04575.1|  376|Caenorhabditis elegans Actin protein 4...    73   4e-14
J01044-1|AAA27889.1|   86|Caenorhabditis elegans protein ( C.ele...    73   4e-14
J01042-1|AAA27887.1|   86|Caenorhabditis elegans protein ( C.ele...    73   4e-14
Z81584-5|CAB04675.1|  376|Caenorhabditis elegans Hypothetical pr...    71   1e-13
J01046-1|AAA27890.1|   86|Caenorhabditis elegans protein ( C.ele...    71   1e-13
J01043-1|AAA27888.1|   83|Caenorhabditis elegans protein ( C.ele...    71   1e-13
X16797-1|CAA34718.1|  376|Caenorhabditis elegans actin protein.        70   3e-13
Z83241-1|CAB05817.1|  375|Caenorhabditis elegans Hypothetical pr...    66   4e-12
U64601-6|AAT92068.1|  362|Caenorhabditis elegans Actin protein 4...    36   0.004
AL132949-19|CAB70110.2|  374|Caenorhabditis elegans Hypothetical...    36   0.006
Z71181-1|CAA94894.1|  395|Caenorhabditis elegans Hypothetical pr...    33   0.043
AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 comple...    28   0.93 

>Z81584-6|CAB04678.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.6 protein.
          Length = 376

 Score = 72.5 bits (170), Expect = 4e-14
 Identities = 33/40 (82%), Positives = 34/40 (85%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           MCD+EVAALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 1   MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 37  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67


>Z81584-4|CAB04676.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.4 protein.
          Length = 376

 Score = 72.5 bits (170), Expect = 4e-14
 Identities = 33/40 (82%), Positives = 34/40 (85%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           MCD+EVAALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 1   MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 37  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67


>X16799-1|CAA34720.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 72.5 bits (170), Expect = 4e-14
 Identities = 33/40 (82%), Positives = 34/40 (85%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           MCD+EVAALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 1   MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 37  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67


>X16798-1|CAA34719.1|  375|Caenorhabditis elegans actin protein.
          Length = 375

 Score = 72.5 bits (170), Expect = 4e-14
 Identities = 33/40 (82%), Positives = 34/40 (85%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           MCD+EVAALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 1   MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 37  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67


>X16796-1|CAA34717.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 72.5 bits (170), Expect = 4e-14
 Identities = 33/40 (82%), Positives = 34/40 (85%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           MCD+EVAALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 1   MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 37  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67


>U64601-5|AAB04575.1|  376|Caenorhabditis elegans Actin protein 4,
           isoform a protein.
          Length = 376

 Score = 72.5 bits (170), Expect = 4e-14
 Identities = 33/40 (82%), Positives = 34/40 (85%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           MCD+EVAALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 1   MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 37  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67


>J01044-1|AAA27889.1|   86|Caenorhabditis elegans protein (
           C.elegans (nematode)actin gene III, 5' end. ).
          Length = 86

 Score = 72.5 bits (170), Expect = 4e-14
 Identities = 33/40 (82%), Positives = 34/40 (85%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           MCD+EVAALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 1   MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 37  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67


>J01042-1|AAA27887.1|   86|Caenorhabditis elegans protein (
           C.elegans (nematode)actin gene I, 5' end. ).
          Length = 86

 Score = 72.5 bits (170), Expect = 4e-14
 Identities = 33/40 (82%), Positives = 34/40 (85%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           MCD+EVAALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 1   MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 37  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67


>Z81584-5|CAB04675.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.5 protein.
          Length = 376

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 32/40 (80%), Positives = 34/40 (85%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           MCD++VAALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 1   MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 37  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67


>J01046-1|AAA27890.1|   86|Caenorhabditis elegans protein (
           C.elegans (nematode)actin gene IV, 5' end. ).
          Length = 86

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 32/40 (80%), Positives = 34/40 (85%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           MCD++VAALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 1   MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 37  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67


>J01043-1|AAA27888.1|   83|Caenorhabditis elegans protein (
           C.elegans (nematode)actin gene II, 5' end. ).
          Length = 83

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 32/40 (80%), Positives = 34/40 (85%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           MCD++VAALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 1   MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 37  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67


>X16797-1|CAA34718.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 69.7 bits (163), Expect = 3e-13
 Identities = 30/40 (75%), Positives = 34/40 (85%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           MCD++VAAL++DNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 1   MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 37  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67


>Z83241-1|CAB05817.1|  375|Caenorhabditis elegans Hypothetical
           protein T25C8.2 protein.
          Length = 375

 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 30/38 (78%), Positives = 32/38 (84%)
 Frame = +3

Query: 72  DEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           +EE+AALVVDNGSGMCKAGF  DDAP A  PSIV RPR
Sbjct: 2   EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 39



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 36  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66


>U64601-6|AAT92068.1|  362|Caenorhabditis elegans Actin protein 4,
           isoform c protein.
          Length = 362

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KDSYV  EA  +   LT
Sbjct: 23  GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 53



 Score = 33.9 bits (74), Expect = 0.019
 Identities = 15/22 (68%), Positives = 16/22 (72%)
 Frame = +3

Query: 120 KAGFXXDDAPXAEXPSIVXRPR 185
           +AGF  DDAP A  PSIV RPR
Sbjct: 5   RAGFAGDDAPRAVFPSIVGRPR 26


>AL132949-19|CAB70110.2|  374|Caenorhabditis elegans Hypothetical
           protein Y53F4B.22 protein.
          Length = 374

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 90  LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           +V+DNGSG+ KAGF  +  P     + V RP+
Sbjct: 11  VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPK 42


>Z71181-1|CAA94894.1|  395|Caenorhabditis elegans Hypothetical
           protein K07C5.1 protein.
          Length = 395

 Score = 32.7 bits (71), Expect = 0.043
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 90  LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRP 182
           +VVDNG+G  K G+   + P    PS+V RP
Sbjct: 9   IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRP 39


>AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 complex
           component protein 1 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 66  MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173
           M   ++ A V+DNG+G  K G+  +  P    PS +
Sbjct: 1   MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAI 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,764,127
Number of Sequences: 27780
Number of extensions: 63794
Number of successful extensions: 162
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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