Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0908.Seq
(289 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 73 4e-14
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 73 4e-14
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 73 4e-14
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 73 4e-14
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 73 4e-14
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 73 4e-14
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 73 4e-14
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 73 4e-14
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 71 1e-13
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 71 1e-13
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 71 1e-13
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 70 3e-13
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 66 4e-12
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 36 0.004
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 36 0.006
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 33 0.043
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 28 0.93
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 72.5 bits (170), Expect = 4e-14
Identities = 33/40 (82%), Positives = 34/40 (85%)
Frame = +3
Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
MCD+EVAALVVDNGSGMCKAGF DDAP A PSIV RPR
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KDSYV EA + LT
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 72.5 bits (170), Expect = 4e-14
Identities = 33/40 (82%), Positives = 34/40 (85%)
Frame = +3
Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
MCD+EVAALVVDNGSGMCKAGF DDAP A PSIV RPR
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KDSYV EA + LT
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 72.5 bits (170), Expect = 4e-14
Identities = 33/40 (82%), Positives = 34/40 (85%)
Frame = +3
Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
MCD+EVAALVVDNGSGMCKAGF DDAP A PSIV RPR
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KDSYV EA + LT
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 72.5 bits (170), Expect = 4e-14
Identities = 33/40 (82%), Positives = 34/40 (85%)
Frame = +3
Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
MCD+EVAALVVDNGSGMCKAGF DDAP A PSIV RPR
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KDSYV EA + LT
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 72.5 bits (170), Expect = 4e-14
Identities = 33/40 (82%), Positives = 34/40 (85%)
Frame = +3
Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
MCD+EVAALVVDNGSGMCKAGF DDAP A PSIV RPR
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KDSYV EA + LT
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 72.5 bits (170), Expect = 4e-14
Identities = 33/40 (82%), Positives = 34/40 (85%)
Frame = +3
Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
MCD+EVAALVVDNGSGMCKAGF DDAP A PSIV RPR
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KDSYV EA + LT
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 72.5 bits (170), Expect = 4e-14
Identities = 33/40 (82%), Positives = 34/40 (85%)
Frame = +3
Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
MCD+EVAALVVDNGSGMCKAGF DDAP A PSIV RPR
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KDSYV EA + LT
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 72.5 bits (170), Expect = 4e-14
Identities = 33/40 (82%), Positives = 34/40 (85%)
Frame = +3
Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
MCD+EVAALVVDNGSGMCKAGF DDAP A PSIV RPR
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KDSYV EA + LT
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 71.3 bits (167), Expect = 1e-13
Identities = 32/40 (80%), Positives = 34/40 (85%)
Frame = +3
Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
MCD++VAALVVDNGSGMCKAGF DDAP A PSIV RPR
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KDSYV EA + LT
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 71.3 bits (167), Expect = 1e-13
Identities = 32/40 (80%), Positives = 34/40 (85%)
Frame = +3
Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
MCD++VAALVVDNGSGMCKAGF DDAP A PSIV RPR
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KDSYV EA + LT
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 71.3 bits (167), Expect = 1e-13
Identities = 32/40 (80%), Positives = 34/40 (85%)
Frame = +3
Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
MCD++VAALVVDNGSGMCKAGF DDAP A PSIV RPR
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KDSYV EA + LT
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 69.7 bits (163), Expect = 3e-13
Identities = 30/40 (75%), Positives = 34/40 (85%)
Frame = +3
Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
MCD++VAAL++DNGSGMCKAGF DDAP A PSIV RPR
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KDSYV EA + LT
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 66.1 bits (154), Expect = 4e-12
Identities = 30/38 (78%), Positives = 32/38 (84%)
Frame = +3
Query: 72 DEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
+EE+AALVVDNGSGMCKAGF DDAP A PSIV RPR
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 39
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KDSYV EA + LT
Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KDSYV EA + LT
Sbjct: 23 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 53
Score = 33.9 bits (74), Expect = 0.019
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +3
Query: 120 KAGFXXDDAPXAEXPSIVXRPR 185
+AGF DDAP A PSIV RPR
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPR 26
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 35.5 bits (78), Expect = 0.006
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
+V+DNGSG+ KAGF + P + V RP+
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPK 42
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 32.7 bits (71), Expect = 0.043
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRP 182
+VVDNG+G K G+ + P PS+V RP
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRP 39
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 28.3 bits (60), Expect = 0.93
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173
M ++ A V+DNG+G K G+ + P PS +
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAI 36
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,764,127
Number of Sequences: 27780
Number of extensions: 63794
Number of successful extensions: 162
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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