BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0908.Seq (289 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 73 4e-14 Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 73 4e-14 X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 73 4e-14 X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 73 4e-14 X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 73 4e-14 U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 73 4e-14 J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 73 4e-14 J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 73 4e-14 Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 71 1e-13 J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 71 1e-13 J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 71 1e-13 X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 70 3e-13 Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 66 4e-12 U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 36 0.004 AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 36 0.006 Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 33 0.043 AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 28 0.93 >Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical protein T04C12.6 protein. Length = 376 Score = 72.5 bits (170), Expect = 4e-14 Identities = 33/40 (82%), Positives = 34/40 (85%) Frame = +3 Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 MCD+EVAALVVDNGSGMCKAGF DDAP A PSIV RPR Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67 >Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical protein T04C12.4 protein. Length = 376 Score = 72.5 bits (170), Expect = 4e-14 Identities = 33/40 (82%), Positives = 34/40 (85%) Frame = +3 Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 MCD+EVAALVVDNGSGMCKAGF DDAP A PSIV RPR Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67 >X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. Length = 376 Score = 72.5 bits (170), Expect = 4e-14 Identities = 33/40 (82%), Positives = 34/40 (85%) Frame = +3 Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 MCD+EVAALVVDNGSGMCKAGF DDAP A PSIV RPR Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67 >X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. Length = 375 Score = 72.5 bits (170), Expect = 4e-14 Identities = 33/40 (82%), Positives = 34/40 (85%) Frame = +3 Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 MCD+EVAALVVDNGSGMCKAGF DDAP A PSIV RPR Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67 >X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. Length = 376 Score = 72.5 bits (170), Expect = 4e-14 Identities = 33/40 (82%), Positives = 34/40 (85%) Frame = +3 Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 MCD+EVAALVVDNGSGMCKAGF DDAP A PSIV RPR Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67 >U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4, isoform a protein. Length = 376 Score = 72.5 bits (170), Expect = 4e-14 Identities = 33/40 (82%), Positives = 34/40 (85%) Frame = +3 Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 MCD+EVAALVVDNGSGMCKAGF DDAP A PSIV RPR Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67 >J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.elegans (nematode)actin gene III, 5' end. ). Length = 86 Score = 72.5 bits (170), Expect = 4e-14 Identities = 33/40 (82%), Positives = 34/40 (85%) Frame = +3 Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 MCD+EVAALVVDNGSGMCKAGF DDAP A PSIV RPR Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67 >J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.elegans (nematode)actin gene I, 5' end. ). Length = 86 Score = 72.5 bits (170), Expect = 4e-14 Identities = 33/40 (82%), Positives = 34/40 (85%) Frame = +3 Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 MCD+EVAALVVDNGSGMCKAGF DDAP A PSIV RPR Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67 >Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical protein T04C12.5 protein. Length = 376 Score = 71.3 bits (167), Expect = 1e-13 Identities = 32/40 (80%), Positives = 34/40 (85%) Frame = +3 Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 MCD++VAALVVDNGSGMCKAGF DDAP A PSIV RPR Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67 >J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.elegans (nematode)actin gene IV, 5' end. ). Length = 86 Score = 71.3 bits (167), Expect = 1e-13 Identities = 32/40 (80%), Positives = 34/40 (85%) Frame = +3 Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 MCD++VAALVVDNGSGMCKAGF DDAP A PSIV RPR Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67 >J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.elegans (nematode)actin gene II, 5' end. ). Length = 83 Score = 71.3 bits (167), Expect = 1e-13 Identities = 32/40 (80%), Positives = 34/40 (85%) Frame = +3 Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 MCD++VAALVVDNGSGMCKAGF DDAP A PSIV RPR Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67 >X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. Length = 376 Score = 69.7 bits (163), Expect = 3e-13 Identities = 30/40 (75%), Positives = 34/40 (85%) Frame = +3 Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 MCD++VAAL++DNGSGMCKAGF DDAP A PSIV RPR Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67 >Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical protein T25C8.2 protein. Length = 375 Score = 66.1 bits (154), Expect = 4e-12 Identities = 30/38 (78%), Positives = 32/38 (84%) Frame = +3 Query: 72 DEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 +EE+AALVVDNGSGMCKAGF DDAP A PSIV RPR Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 39 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66 >U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4, isoform c protein. Length = 362 Score = 36.3 bits (80), Expect = 0.004 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KDSYV EA + LT Sbjct: 23 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 53 Score = 33.9 bits (74), Expect = 0.019 Identities = 15/22 (68%), Positives = 16/22 (72%) Frame = +3 Query: 120 KAGFXXDDAPXAEXPSIVXRPR 185 +AGF DDAP A PSIV RPR Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPR 26 >AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical protein Y53F4B.22 protein. Length = 374 Score = 35.5 bits (78), Expect = 0.006 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +3 Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 +V+DNGSG+ KAGF + P + V RP+ Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPK 42 >Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical protein K07C5.1 protein. Length = 395 Score = 32.7 bits (71), Expect = 0.043 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +3 Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRP 182 +VVDNG+G K G+ + P PS+V RP Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRP 39 >AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex component protein 1 protein. Length = 425 Score = 28.3 bits (60), Expect = 0.93 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = +3 Query: 66 MCDEEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173 M ++ A V+DNG+G K G+ + P PS + Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAI 36 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 4,764,127 Number of Sequences: 27780 Number of extensions: 63794 Number of successful extensions: 162 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 148 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 162 length of database: 12,740,198 effective HSP length: 70 effective length of database: 10,795,598 effective search space used: 269889950 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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