Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0908.Seq
(289 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 55 9e-09
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 53 4e-08
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 53 4e-08
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 53 4e-08
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 53 4e-08
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 53 4e-08
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 53 4e-08
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 50 2e-07
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 50 2e-07
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 50 2e-07
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 44 2e-05
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 43 3e-05
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 38 8e-04
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 33 0.042
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 29 0.52
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 27 1.6
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 27 2.1
At4g32105.1 68417.m04568 expressed protein 26 3.7
At3g48860.2 68416.m05337 expressed protein 25 8.4
At3g48860.1 68416.m05336 expressed protein 25 8.4
At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family... 25 8.4
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 54.8 bits (126), Expect = 9e-09
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPRIXA*WSXWDXR-TLMYXMRHTSK 251
+E A+V DNG+GM KAGF DDAP A PS+V RPR D + T + +
Sbjct: 6 DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQARR 65
Query: 252 XVX*PQIPIEHG 287
+ + PIEHG
Sbjct: 66 GILSLKYPIEHG 77
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
E++ LV DNG+GM KAGF DDAP A PSIV RPR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
Score = 35.1 bits (77), Expect = 0.008
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KD+YV EA + LT
Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
E++ LV DNG+GM KAGF DDAP A PSIV RPR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
Score = 35.1 bits (77), Expect = 0.008
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KD+YV EA + LT
Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
E++ LV DNG+GM KAGF DDAP A PSIV RPR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
Score = 35.1 bits (77), Expect = 0.008
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KD+YV EA + LT
Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
E++ LV DNG+GM KAGF DDAP A PSIV RPR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
Score = 35.1 bits (77), Expect = 0.008
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KD+YV EA + LT
Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
E++ LV DNG+GM KAGF DDAP A PSIV RPR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
Score = 35.1 bits (77), Expect = 0.008
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KD+YV EA + LT
Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
E++ LV DNG+GM KAGF DDAP A PSIV RPR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
Score = 35.1 bits (77), Expect = 0.008
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV MG KD+YV EA + LT
Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 50.4 bits (115), Expect = 2e-07
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
+++ +V DNG+GM KAGF DDAP A PS+V RPR
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPR 41
Score = 32.7 bits (71), Expect = 0.042
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV M KD+YV EA + LT
Sbjct: 38 GRPRHHGVMVGMNQKDAYVGDEAQSKRGILT 68
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 50.4 bits (115), Expect = 2e-07
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
+++ +V DNG+GM KAGF DDAP A PS+V RPR
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPR 41
Score = 32.7 bits (71), Expect = 0.042
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV M KD+YV EA + LT
Sbjct: 38 GRPRHHGVMVGMNQKDAYVGDEAQSKRGILT 68
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 50.4 bits (115), Expect = 2e-07
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
+++ +V DNG+GM KAGF DDAP A PS+V RPR
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPR 41
Score = 32.7 bits (71), Expect = 0.042
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
G+ H GVMV M KD+YV EA + LT
Sbjct: 38 GRPRHHGVMVGMNQKDAYVGDEAQSKRGILT 68
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173
+EV+A+VVD GS CKAG+ +DAP A PS+V
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVV 37
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 43.2 bits (97), Expect = 3e-05
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173
+EV+A+VVD GS CKAG+ +DAP A PS++
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVI 37
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 38.3 bits (85), Expect = 8e-04
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
+V D G GM +AGF D+AP P +V RPR
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPR 35
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 32.7 bits (71), Expect = 0.042
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRP 182
+V DNG+G K GF ++ P + P +V RP
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRP 37
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 29.1 bits (62), Expect = 0.52
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 87 ALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173
A+V+DNG+G K GF + P P++V
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVV 36
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRP 182
+V+DNG G+ KAG + P P+ + +P
Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKP 35
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
+V+DNG+ + G+ + P +IV RPR
Sbjct: 22 IVIDNGASYFRIGWAGETEPRVVFRNIVQRPR 53
>At4g32105.1 68417.m04568 expressed protein
Length = 124
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 158 LGARSIISXETGL-AHTGAIVYYQRGNFFVAHLELVFN 48
+G +S+ T L + +G I GNF H++ VFN
Sbjct: 68 VGFQSVTPVATSLLSKSGDICLLNAGNFIFPHVDFVFN 105
>At3g48860.2 68416.m05337 expressed protein
Length = 577
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 145 ASSXXKPALHIPEPLSTTNAATSSSH 68
AS+ KPA H P +S+T + +S+ +
Sbjct: 89 ASASLKPARHAPSSISSTGSNSSNGN 114
>At3g48860.1 68416.m05336 expressed protein
Length = 494
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 145 ASSXXKPALHIPEPLSTTNAATSSSH 68
AS+ KPA H P +S+T + +S+ +
Sbjct: 89 ASASLKPARHAPSSISSTGSNSSNGN 114
>At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family
protein
Length = 883
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -1
Query: 208 HXDHHAXMRGLXTIEGNSAXGASSXXKPALHIPEPLSTTN 89
H + + G+ NS G S K +H+P P+S ++
Sbjct: 213 HCPVNKELGGVTLPSTNSVLGVYSSSKDPVHVPSPVSRSS 252
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,540,770
Number of Sequences: 28952
Number of extensions: 59799
Number of successful extensions: 125
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 261894672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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