SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0908.Seq
         (289 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42100.1 68415.m05205 actin, putative very strong similarity ...    55   9e-09
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A...    53   4e-08
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S...    53   4e-08
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A...    53   4e-08
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497...    53   4e-08
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496...    53   4e-08
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A...    53   4e-08
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A...    50   2e-07
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A...    50   2e-07
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A...    50   2e-07
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica...    44   2e-05
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id...    43   3e-05
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac...    38   8e-04
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i...    33   0.042
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica...    29   0.52 
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i...    27   1.6  
At3g12380.1 68416.m01543 actin/actin-like family protein similar...    27   2.1  
At4g32105.1 68417.m04568 expressed protein                             26   3.7  
At3g48860.2 68416.m05337 expressed protein                             25   8.4  
At3g48860.1 68416.m05336 expressed protein                             25   8.4  
At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family...    25   8.4  

>At2g42100.1 68415.m05205 actin, putative very strong similarity to
           SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
           Actin 3 {Arabidopsis thaliana}; contains Pfam profile
           PF00022: Actin
          Length = 378

 Score = 54.8 bits (126), Expect = 9e-09
 Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPRIXA*WSXWDXR-TLMYXMRHTSK 251
           +E  A+V DNG+GM KAGF  DDAP A  PS+V RPR        D + T +       +
Sbjct: 6   DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQARR 65

Query: 252 XVX*PQIPIEHG 287
            +   + PIEHG
Sbjct: 66  GILSLKYPIEHG 77


>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
           Actin 4 {Arabidopsis thaliana}
          Length = 377

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 24/37 (64%), Positives = 27/37 (72%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           E++  LV DNG+GM KAGF  DDAP A  PSIV RPR
Sbjct: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41



 Score = 35.1 bits (77), Expect = 0.008
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KD+YV  EA  +   LT
Sbjct: 38  GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68


>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
           SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
          Length = 377

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 24/37 (64%), Positives = 27/37 (72%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           E++  LV DNG+GM KAGF  DDAP A  PSIV RPR
Sbjct: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41



 Score = 35.1 bits (77), Expect = 0.008
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KD+YV  EA  +   LT
Sbjct: 38  GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68


>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
           Actin 3 {Arabidopsis thaliana}; supported by full-length
           cDNA: Ceres: 19581.
          Length = 377

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 24/37 (64%), Positives = 27/37 (72%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           E++  LV DNG+GM KAGF  DDAP A  PSIV RPR
Sbjct: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41



 Score = 35.1 bits (77), Expect = 0.008
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KD+YV  EA  +   LT
Sbjct: 38  GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68


>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
           Actin 12 {Arabidopsis thaliana}
          Length = 377

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 24/37 (64%), Positives = 27/37 (72%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           E++  LV DNG+GM KAGF  DDAP A  PSIV RPR
Sbjct: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41



 Score = 35.1 bits (77), Expect = 0.008
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KD+YV  EA  +   LT
Sbjct: 38  GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68


>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
           Actin 11 {Arabidopsis thaliana}
          Length = 377

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 24/37 (64%), Positives = 27/37 (72%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           E++  LV DNG+GM KAGF  DDAP A  PSIV RPR
Sbjct: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41



 Score = 35.1 bits (77), Expect = 0.008
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KD+YV  EA  +   LT
Sbjct: 38  GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68


>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
           Actin 1 (Actin 3) {Arabidopsis thaliana}
          Length = 377

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 24/37 (64%), Positives = 27/37 (72%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           E++  LV DNG+GM KAGF  DDAP A  PSIV RPR
Sbjct: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41



 Score = 35.1 bits (77), Expect = 0.008
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV MG KD+YV  EA  +   LT
Sbjct: 38  GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68


>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
           Actin 2 {Arabidopsis thaliana}; nearly identical to
           SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
           to At1g49240
          Length = 377

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 21/37 (56%), Positives = 27/37 (72%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           +++  +V DNG+GM KAGF  DDAP A  PS+V RPR
Sbjct: 5   DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPR 41



 Score = 32.7 bits (71), Expect = 0.042
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV M  KD+YV  EA  +   LT
Sbjct: 38  GRPRHHGVMVGMNQKDAYVGDEAQSKRGILT 68


>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
           Actin 2 {Arabidopsis thaliana}; nearly identical to
           SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
           to At1g49240
          Length = 371

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 21/37 (56%), Positives = 27/37 (72%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           +++  +V DNG+GM KAGF  DDAP A  PS+V RPR
Sbjct: 5   DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPR 41



 Score = 32.7 bits (71), Expect = 0.042
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV M  KD+YV  EA  +   LT
Sbjct: 38  GRPRHHGVMVGMNQKDAYVGDEAQSKRGILT 68


>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
           Actin 8 {Arabidopsis thaliana}; nearly identical to
           SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
           to At3g18780
          Length = 377

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 21/37 (56%), Positives = 27/37 (72%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           +++  +V DNG+GM KAGF  DDAP A  PS+V RPR
Sbjct: 5   DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPR 41



 Score = 32.7 bits (71), Expect = 0.042
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265
           G+  H GVMV M  KD+YV  EA  +   LT
Sbjct: 38  GRPRHHGVMVGMNQKDAYVGDEAQSKRGILT 68


>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
           to actin-related protein 5 (ARP5) GI:21489922 from
           [Arabidopsis thaliana]
          Length = 145

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173
           +EV+A+VVD GS  CKAG+  +DAP A  PS+V
Sbjct: 5   DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVV 37


>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
           identical to actin-related protein 4 (ARP4) [Arabidopsis
           thaliana] GI:21427463; contains Pfam profile PF00022:
           Actin; supporting cDNA gi|21427462|gb|AF507912.1|
          Length = 441

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 18/33 (54%), Positives = 25/33 (75%)
 Frame = +3

Query: 75  EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173
           +EV+A+VVD GS  CKAG+  +DAP A  PS++
Sbjct: 5   DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVI 37


>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
           11 {Arabidopsis thaliana}; contains Pfam profile
           PF00022: Actin
          Length = 366

 Score = 38.3 bits (85), Expect = 8e-04
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 90  LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           +V D G GM +AGF  D+AP    P +V RPR
Sbjct: 4   IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPR 35


>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
           identical to actin-related protein 2 (ARP2) [Arabidopsis
           thaliana] GI:3818624; contains Pfam profile PF00022:
           Actin
          Length = 389

 Score = 32.7 bits (71), Expect = 0.042
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 90  LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRP 182
           +V DNG+G  K GF  ++ P +  P +V RP
Sbjct: 7   VVCDNGTGYVKCGFAGENFPTSVFPCVVGRP 37


>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
           to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
           GI:21427461; contains Pfam profile PF00022: Actin
          Length = 427

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 87  ALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173
           A+V+DNG+G  K GF  +  P    P++V
Sbjct: 8   AIVIDNGTGYTKMGFAGNVEPCFILPTVV 36


>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
           identical to actin-related protein 6 (ARP6) [Arabidopsis
           thaliana] GI:21427467; contains Pfam profile PF00022:
           Actin
          Length = 421

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 90  LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRP 182
           +V+DNG G+ KAG   +  P    P+ + +P
Sbjct: 5   VVLDNGGGLIKAGQGGERDPTTVIPNCLYKP 35


>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
           SP|P53946 Actin-like protein ARP5 {Saccharomyces
           cerevisiae}; contains Pfam profile PF00022: Actin
          Length = 724

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 90  LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185
           +V+DNG+   + G+  +  P     +IV RPR
Sbjct: 22  IVIDNGASYFRIGWAGETEPRVVFRNIVQRPR 53


>At4g32105.1 68417.m04568 expressed protein
          Length = 124

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 158 LGARSIISXETGL-AHTGAIVYYQRGNFFVAHLELVFN 48
           +G +S+    T L + +G I     GNF   H++ VFN
Sbjct: 68  VGFQSVTPVATSLLSKSGDICLLNAGNFIFPHVDFVFN 105


>At3g48860.2 68416.m05337 expressed protein
          Length = 577

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 145 ASSXXKPALHIPEPLSTTNAATSSSH 68
           AS+  KPA H P  +S+T + +S+ +
Sbjct: 89  ASASLKPARHAPSSISSTGSNSSNGN 114


>At3g48860.1 68416.m05336 expressed protein
          Length = 494

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 145 ASSXXKPALHIPEPLSTTNAATSSSH 68
           AS+  KPA H P  +S+T + +S+ +
Sbjct: 89  ASASLKPARHAPSSISSTGSNSSNGN 114


>At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family
           protein
          Length = 883

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 208 HXDHHAXMRGLXTIEGNSAXGASSXXKPALHIPEPLSTTN 89
           H   +  + G+     NS  G  S  K  +H+P P+S ++
Sbjct: 213 HCPVNKELGGVTLPSTNSVLGVYSSSKDPVHVPSPVSRSS 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,540,770
Number of Sequences: 28952
Number of extensions: 59799
Number of successful extensions: 125
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 261894672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -