BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0908.Seq (289 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g42100.1 68415.m05205 actin, putative very strong similarity ... 55 9e-09 At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 53 4e-08 At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 53 4e-08 At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 53 4e-08 At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 53 4e-08 At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 53 4e-08 At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 53 4e-08 At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 50 2e-07 At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 50 2e-07 At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 50 2e-07 At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 44 2e-05 At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 43 3e-05 At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 38 8e-04 At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 33 0.042 At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 29 0.52 At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 27 1.6 At3g12380.1 68416.m01543 actin/actin-like family protein similar... 27 2.1 At4g32105.1 68417.m04568 expressed protein 26 3.7 At3g48860.2 68416.m05337 expressed protein 25 8.4 At3g48860.1 68416.m05336 expressed protein 25 8.4 At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family... 25 8.4 >At2g42100.1 68415.m05205 actin, putative very strong similarity to SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493 Actin 3 {Arabidopsis thaliana}; contains Pfam profile PF00022: Actin Length = 378 Score = 54.8 bits (126), Expect = 9e-09 Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPRIXA*WSXWDXR-TLMYXMRHTSK 251 +E A+V DNG+GM KAGF DDAP A PS+V RPR D + T + + Sbjct: 6 DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQARR 65 Query: 252 XVX*PQIPIEHG 287 + + PIEHG Sbjct: 66 GILSLKYPIEHG 77 >At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 Actin 4 {Arabidopsis thaliana} Length = 377 Score = 52.8 bits (121), Expect = 4e-08 Identities = 24/37 (64%), Positives = 27/37 (72%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 E++ LV DNG+GM KAGF DDAP A PSIV RPR Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41 Score = 35.1 bits (77), Expect = 0.008 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KD+YV EA + LT Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68 >At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana} Length = 377 Score = 52.8 bits (121), Expect = 4e-08 Identities = 24/37 (64%), Positives = 27/37 (72%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 E++ LV DNG+GM KAGF DDAP A PSIV RPR Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41 Score = 35.1 bits (77), Expect = 0.008 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KD+YV EA + LT Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68 >At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 Actin 3 {Arabidopsis thaliana}; supported by full-length cDNA: Ceres: 19581. Length = 377 Score = 52.8 bits (121), Expect = 4e-08 Identities = 24/37 (64%), Positives = 27/37 (72%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 E++ LV DNG+GM KAGF DDAP A PSIV RPR Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41 Score = 35.1 bits (77), Expect = 0.008 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KD+YV EA + LT Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68 >At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497 Actin 12 {Arabidopsis thaliana} Length = 377 Score = 52.8 bits (121), Expect = 4e-08 Identities = 24/37 (64%), Positives = 27/37 (72%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 E++ LV DNG+GM KAGF DDAP A PSIV RPR Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41 Score = 35.1 bits (77), Expect = 0.008 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KD+YV EA + LT Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68 >At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496 Actin 11 {Arabidopsis thaliana} Length = 377 Score = 52.8 bits (121), Expect = 4e-08 Identities = 24/37 (64%), Positives = 27/37 (72%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 E++ LV DNG+GM KAGF DDAP A PSIV RPR Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41 Score = 35.1 bits (77), Expect = 0.008 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KD+YV EA + LT Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68 >At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 Actin 1 (Actin 3) {Arabidopsis thaliana} Length = 377 Score = 52.8 bits (121), Expect = 4e-08 Identities = 24/37 (64%), Positives = 27/37 (72%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 E++ LV DNG+GM KAGF DDAP A PSIV RPR Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41 Score = 35.1 bits (77), Expect = 0.008 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV MG KD+YV EA + LT Sbjct: 38 GRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68 >At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240 Length = 377 Score = 50.4 bits (115), Expect = 2e-07 Identities = 21/37 (56%), Positives = 27/37 (72%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 +++ +V DNG+GM KAGF DDAP A PS+V RPR Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPR 41 Score = 32.7 bits (71), Expect = 0.042 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV M KD+YV EA + LT Sbjct: 38 GRPRHHGVMVGMNQKDAYVGDEAQSKRGILT 68 >At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240 Length = 371 Score = 50.4 bits (115), Expect = 2e-07 Identities = 21/37 (56%), Positives = 27/37 (72%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 +++ +V DNG+GM KAGF DDAP A PS+V RPR Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPR 41 Score = 32.7 bits (71), Expect = 0.042 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV M KD+YV EA + LT Sbjct: 38 GRPRHHGVMVGMNQKDAYVGDEAQSKRGILT 68 >At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 Actin 8 {Arabidopsis thaliana}; nearly identical to SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and to At3g18780 Length = 377 Score = 50.4 bits (115), Expect = 2e-07 Identities = 21/37 (56%), Positives = 27/37 (72%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 +++ +V DNG+GM KAGF DDAP A PS+V RPR Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPR 41 Score = 32.7 bits (71), Expect = 0.042 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = +2 Query: 173 GKAPHXGVMVXMGXKDSYVRXEAHEQXSXLT 265 G+ H GVMV M KD+YV EA + LT Sbjct: 38 GRPRHHGVMVGMNQKDAYVGDEAQSKRGILT 68 >At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical to actin-related protein 5 (ARP5) GI:21489922 from [Arabidopsis thaliana] Length = 145 Score = 43.6 bits (98), Expect = 2e-05 Identities = 19/33 (57%), Positives = 25/33 (75%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173 +EV+A+VVD GS CKAG+ +DAP A PS+V Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVV 37 >At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary identical to actin-related protein 4 (ARP4) [Arabidopsis thaliana] GI:21427463; contains Pfam profile PF00022: Actin; supporting cDNA gi|21427462|gb|AF507912.1| Length = 441 Score = 43.2 bits (97), Expect = 3e-05 Identities = 18/33 (54%), Positives = 25/33 (75%) Frame = +3 Query: 75 EEVAALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173 +EV+A+VVD GS CKAG+ +DAP A PS++ Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVI 37 >At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin 11 {Arabidopsis thaliana}; contains Pfam profile PF00022: Actin Length = 366 Score = 38.3 bits (85), Expect = 8e-04 Identities = 16/32 (50%), Positives = 20/32 (62%) Frame = +3 Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 +V D G GM +AGF D+AP P +V RPR Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPR 35 >At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly identical to actin-related protein 2 (ARP2) [Arabidopsis thaliana] GI:3818624; contains Pfam profile PF00022: Actin Length = 389 Score = 32.7 bits (71), Expect = 0.042 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +3 Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRP 182 +V DNG+G K GF ++ P + P +V RP Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRP 37 >At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical to actin-related protein 3 (ARP3) [Arabidopsis thaliana] GI:21427461; contains Pfam profile PF00022: Actin Length = 427 Score = 29.1 bits (62), Expect = 0.52 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 87 ALVVDNGSGMCKAGFXXDDAPXAEXPSIV 173 A+V+DNG+G K GF + P P++V Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVV 36 >At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly identical to actin-related protein 6 (ARP6) [Arabidopsis thaliana] GI:21427467; contains Pfam profile PF00022: Actin Length = 421 Score = 27.5 bits (58), Expect = 1.6 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = +3 Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRP 182 +V+DNG G+ KAG + P P+ + +P Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKP 35 >At3g12380.1 68416.m01543 actin/actin-like family protein similar to SP|P53946 Actin-like protein ARP5 {Saccharomyces cerevisiae}; contains Pfam profile PF00022: Actin Length = 724 Score = 27.1 bits (57), Expect = 2.1 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +3 Query: 90 LVVDNGSGMCKAGFXXDDAPXAEXPSIVXRPR 185 +V+DNG+ + G+ + P +IV RPR Sbjct: 22 IVIDNGASYFRIGWAGETEPRVVFRNIVQRPR 53 >At4g32105.1 68417.m04568 expressed protein Length = 124 Score = 26.2 bits (55), Expect = 3.7 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -3 Query: 158 LGARSIISXETGL-AHTGAIVYYQRGNFFVAHLELVFN 48 +G +S+ T L + +G I GNF H++ VFN Sbjct: 68 VGFQSVTPVATSLLSKSGDICLLNAGNFIFPHVDFVFN 105 >At3g48860.2 68416.m05337 expressed protein Length = 577 Score = 25.0 bits (52), Expect = 8.4 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -1 Query: 145 ASSXXKPALHIPEPLSTTNAATSSSH 68 AS+ KPA H P +S+T + +S+ + Sbjct: 89 ASASLKPARHAPSSISSTGSNSSNGN 114 >At3g48860.1 68416.m05336 expressed protein Length = 494 Score = 25.0 bits (52), Expect = 8.4 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -1 Query: 145 ASSXXKPALHIPEPLSTTNAATSSSH 68 AS+ KPA H P +S+T + +S+ + Sbjct: 89 ASASLKPARHAPSSISSTGSNSSNGN 114 >At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family protein Length = 883 Score = 25.0 bits (52), Expect = 8.4 Identities = 11/40 (27%), Positives = 19/40 (47%) Frame = -1 Query: 208 HXDHHAXMRGLXTIEGNSAXGASSXXKPALHIPEPLSTTN 89 H + + G+ NS G S K +H+P P+S ++ Sbjct: 213 HCPVNKELGGVTLPSTNSVLGVYSSSKDPVHVPSPVSRSS 252 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 4,540,770 Number of Sequences: 28952 Number of extensions: 59799 Number of successful extensions: 125 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 124 length of database: 12,070,560 effective HSP length: 69 effective length of database: 10,072,872 effective search space used: 261894672 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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