BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0907.Seq (419 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 30 0.13 SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 4.8 SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 25 6.3 SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 24 8.4 >SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schizosaccharomyces pombe|chr 1|||Manual Length = 267 Score = 30.3 bits (65), Expect = 0.13 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -2 Query: 304 PCNHGSRRNYHRKLIRQHLKDASPVLDHAICKSYPD 197 PC+H +YH K IR L ++ P IC+ Y D Sbjct: 209 PCSH----SYHYKCIRPTLNESHPYFSCFICRKYHD 240 >SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 338 Score = 25.0 bits (52), Expect = 4.8 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = +2 Query: 20 NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSD 124 N IY+ +F ++S++ + + I L +RT++SD Sbjct: 14 NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSD 48 >SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 300 Score = 24.6 bits (51), Expect = 6.3 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = -2 Query: 283 RNYHR--KLIRQHLKDASPVLDHAICKSYPDSSKLTTSDARPSVDWF*SN 140 ++Y R L+R+HL D + H +C+ P +TT PS+ F S+ Sbjct: 213 KSYQRFATLLRRHLLDKTAKRYHDLCEKRP-YKYITTDLLSPSLTCFASD 261 >SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 469 Score = 24.2 bits (50), Expect = 8.4 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -2 Query: 253 HLKDASPVLDHAICKSYPDSSKLTTSDAR 167 HL+D S H++ KS + L TSD R Sbjct: 211 HLQDVSSPSAHSLEKSLHKPASLQTSDKR 239 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,582,567 Number of Sequences: 5004 Number of extensions: 27946 Number of successful extensions: 61 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 61 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 148351622 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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