Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0907.Seq
         (419 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19775| Best HMM Match : Arm (HMM E-Value=0.27)                      31   0.51 
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)           28   2.7  
SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.3  
SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8)                    27   8.3  

>SB_19775| Best HMM Match : Arm (HMM E-Value=0.27)
          Length = 607

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 271 RKLIRQHLKDASPVLDHAICKSYPDSSKLTTSDARPSVDWF*SNKSTHPITGQSSDCMY 95
           ++ +R  LK AS   + +     PD++K TT  +  S     S  STH    +SS   Y
Sbjct: 119 KRFVRNRLKPASSRQEDSAKSIVPDNNKSTTVSSCKSTTAVNSRTSTHSAGSKSSSAAY 177


>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
          Length = 1078

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 301 CNHGSRRNYHRKLIRQHLKDASPVLDHAICKSYPDSSKLTTSDAR 167
           C+H +R  Y R+L+RQH+K     L+  I +  P+ ++  T + R
Sbjct: 300 CDHCNRTFYIRELLRQHIKTVVKNLEGKI-RIIPELTEPQTREFR 343


>SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 11  DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDG 127
           D  NG+I  F    +    W   + LE IH + TL  DG
Sbjct: 263 DFGNGTISSFTGNITRFNVWTLYISLEFIHNMATLVEDG 301


>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 200  WITFADRMVKYRRRIFQM 253
            W TF DR +KY R +F++
Sbjct: 1014 WFTFKDRQLKYYRGVFKV 1031


>SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8)
          Length = 688

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 202 PDSSKLTTSDARPSVDWF*SNKSTHPITGQS 110
           PDS+ L   D   S +WF  N S  P TG +
Sbjct: 627 PDSAHLRREDTSKSAEWF--NMSFEPETGSN 655


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,031,414
Number of Sequences: 59808
Number of extensions: 211346
Number of successful extensions: 538
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)