Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0907.Seq
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   3.1  
Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 11  DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 115
           D+  G++   WF +++SV WI +V+   I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


>Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical
           protein C34C6.3 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 53  SYSVTWITVVILELIHAIRTLTSDGMS 133
           SY+V+WIT       + IR + SDG++
Sbjct: 54  SYNVSWITPAASNSTYRIRLIDSDGLT 80


>Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical
           protein F17C11.10 protein.
          Length = 1101

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 248 ERCVAGT*PCDLQKLSRFIKINDFG 174
           ER V+ + P DL    RF+K N FG
Sbjct: 440 ERFVSNSSPMDLDATQRFLKYNRFG 464


>U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical protein
            ZK430.5 protein.
          Length = 1276

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 148  KTNRRRASRPKSLILMNLDNFCRSHG 225
            K N +R +R + L++  + NFC+ HG
Sbjct: 1229 KDNLKR-TRKRKLLVSTIPNFCKEHG 1253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,735,817
Number of Sequences: 27780
Number of extensions: 154804
Number of successful extensions: 476
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)