Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0907.Seq
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.61 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.61 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   3.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.5  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    21   7.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   9.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   9.9  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 0.61
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 175 PKSLILMNLDNFCRSHGQVPATHLSNVALST 267
           P+ L  +NL + CR HG  PAT  +   L T
Sbjct: 430 PRELEAVNLGSACRIHGS-PATTAAPPQLPT 459


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.61
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 193 MNLDNFCRSHGQVPATHLSNVALSTFDGSF 282
           + L N   S G     H+SN  LS  +G F
Sbjct: 393 VELANKMESSGMAGRVHISNATLSFLNGEF 422


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 11  DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLT 118
           DT    +Y+F   R Y +   T VI  +   + TLT
Sbjct: 237 DTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT 272


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = -3

Query: 198 IHQN*RLRTRGPPSIGFDLIKALIPSLVRVLIACIS 91
           I+Q   L  +   +IG+ + +  +PS++ V+++ +S
Sbjct: 227 IYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVS 262


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/27 (25%), Positives = 12/27 (44%)
 Frame = -2

Query: 277 YHRKLIRQHLKDASPVLDHAICKSYPD 197
           YH   +  HL    P +D  +  + P+
Sbjct: 5   YHVAQLPHHLSPNMPTMDSTVSSAKPE 31


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 4   LRRYREWLNISVLVP*ILLSYL 69
           LRR   +  ++++VP + +SYL
Sbjct: 231 LRRKTLFYTVNLIVPCVSISYL 252


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 79  GNSRANTCN 105
           GNSRANT N
Sbjct: 131 GNSRANTYN 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,780
Number of Sequences: 438
Number of extensions: 2077
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)