Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0907.Seq
         (419 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   0.55 
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu...    29   1.3  
At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putati...    27   5.2  
At4g38560.1 68417.m05459 expressed protein                             27   6.8  
At1g19670.1 68414.m02452 coronatine-responsive protein / coronat...    27   6.8  
At5g49310.1 68418.m06102 importin alpha-1 subunit, putative simi...    26   9.0  
At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase...    26   9.0  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 199 DSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 104
           DS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate
           mutase family protein similar to X4 protein GI:21386798,
           Y4 protein GI:21386800 from  [Silene dioica]; contains
           Pfam profiles PF00300: phosphoglycerate mutase family,
           PF01535: PPR repeat
          Length = 1053

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 157 RRRASRPKSLILMNLDNFCRSHGQVPATHLSNVALSTFDGSFCDYH 294
           +R   +P S+I  +L   CR H  V    +S   L   D S C Y+
Sbjct: 842 QRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYY 887


>At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putative
           (PAUSED) contains Pfam profile: PF04150 exportin-t,
           identical to PAUSED gi:30909318
          Length = 988

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = -3

Query: 228 LTMRSAKVIQIHQN*RLRTRGPPSIGFDLIKALIPSLVRVLIACISSRITTVIQ 67
           LT  + +V++ H+  RL +    ++  DL+  ++PS+  V+  C      +++Q
Sbjct: 304 LTGYAVEVLECHK--RLNSEDTKAVSMDLLNEVLPSVFYVMQKCEVDSTFSIVQ 355


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 8   GDTANGSIYQFWFLRSYSVTWITVVILEL 94
           GD A+GS  Q    +SYS+  +  V+LEL
Sbjct: 360 GDIASGSKLQSLRTKSYSLETLAAVVLEL 388


>At1g19670.1 68414.m02452 coronatine-responsive protein /
           coronatine-induced protein 1 (CORI1) identical to
           coronatine-induced protein 1 (CORI1) GI:30912637 from
           [Arabidopsis thaliana]
          Length = 324

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = -2

Query: 283 RNYHRKLIRQHLKDASPVL-DHAICKSYPDSSKLTTSDARPSVDWF*SNKSTHPITGQSS 107
           RNY    +  H+     +L    +CK  P   ++   DA   ++W   N   H  T  ++
Sbjct: 68  RNYFYSDVLNHIASHGYILVAPQLCKLLPPGGQVEVDDAGSVINWASENLKAHLPTSVNA 127

Query: 106 DCMY 95
           +  Y
Sbjct: 128 NGKY 131


>At5g49310.1 68418.m06102 importin alpha-1 subunit, putative similar
           to importin alpha-1 subunit (Karyopherin alpha-1
           subunit, KAP alpha) [Arabidopsis thaliana]
           SWISS-PROT:Q96321
          Length = 519

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 171 RGPPSIGFDLIKALIPSLVRVL 106
           RG PS  FDL+K ++P L R++
Sbjct: 228 RGKPSPPFDLVKHVLPVLKRLV 249


>At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase C
           (PLC2) identical to phosphoinositide specific
           phospholipase C(AtPLC2) GI:857374 [Arabidopsis thaliana]
          Length = 581

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -2

Query: 268 KLIRQHLKDASPVLDHAICKSYPDSSKLTTSDARPSVDW 152
           K   ++ K       H + + YP  +++T+S+  P V W
Sbjct: 354 KAAEKYAKQIVRFTQHNLLRIYPKGTRVTSSNYNPLVGW 392


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,349,110
Number of Sequences: 28952
Number of extensions: 149459
Number of successful extensions: 309
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)