BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0906.Seq (429 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 29 0.31 SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 0.53 SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 27 1.2 SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51... 26 2.2 SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 2.2 SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 2.9 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 2.9 SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 2.9 SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 3.8 SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 25 3.8 SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 25 5.0 SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 25 5.0 SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 5.0 SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 5.0 SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 25 6.6 SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 24 8.7 >SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 494 Score = 29.1 bits (62), Expect = 0.31 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +1 Query: 10 IEGNQDPVTKALPYSHPQPIRRAPTVPAAP 99 IEG+ D V K LP P +AP P AP Sbjct: 367 IEGDDDEVAKVLPKPPSVPTIQAPIPPEAP 396 >SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 857 Score = 28.3 bits (60), Expect = 0.53 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 7/69 (10%) Frame = +1 Query: 28 PVTKALPYSHPQP-------IRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 186 PV P H P + AP PAAP+ P+A P Q ++P A+ V + P Sbjct: 521 PVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEA-PSVPQRPAVPVVPEALSVPQ--P 577 Query: 187 PLRLVFPGV 213 P+ V P V Sbjct: 578 PVAPVAPEV 586 Score = 24.6 bits (51), Expect = 6.6 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 5/52 (9%) Frame = +1 Query: 31 VTKALPYSHPQPIRRAPTVPAAPIPPQA-----RPGQAQPLQAVLLPRAVQV 171 V +AL P AP VP+ P PP A P QP A + P V Sbjct: 568 VPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSV 619 >SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual Length = 963 Score = 27.1 bits (57), Expect = 1.2 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +1 Query: 49 YSHPQPIRRAPTVPAAPIPPQARPGQA 129 +S+P ++R P +PA P+ P RP A Sbjct: 220 FSYPYELQRKPLIPAHPV-PSFRPTSA 245 >SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51|Schizosaccharomyces pombe|chr 2|||Manual Length = 145 Score = 26.2 bits (55), Expect = 2.2 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +2 Query: 80 RQCQQHRFHLKHVRGKHNHFRQFFYLGRFKYI 175 ++ Q FH+ + +GKH R ++ GR K I Sbjct: 53 KESQDVEFHVTNRQGKHPLIRAYYNTGREKVI 84 >SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 956 Score = 26.2 bits (55), Expect = 2.2 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +3 Query: 324 NTTKHDLEYSL*CLRFKSYLMTSNDXNDNFLFVKL 428 N H LE+ L C + KSY ++ + N FV L Sbjct: 845 NLLPHSLEFILKCSKVKSYDISPSSINSKEAFVCL 879 >SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 331 Score = 25.8 bits (54), Expect = 2.9 Identities = 8/22 (36%), Positives = 14/22 (63%) Frame = +1 Query: 61 QPIRRAPTVPAAPIPPQARPGQ 126 +P+ R P +P P+P + PG+ Sbjct: 101 EPLPREPPLPNEPVPEEPLPGE 122 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 25.8 bits (54), Expect = 2.9 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Frame = +1 Query: 28 PVTKALPY-SHPQPI-RRAPTVPA-APIPPQARPGQAQPLQAVLL-PRAVQVHRTLPPL 192 P T A P S P P AP +P+ AP P + P AQP V P A + +PP+ Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPM 197 >SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 574 Score = 25.8 bits (54), Expect = 2.9 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 28 PVTKALPYSHPQPIRRAPTVPAAPIPPQA-RPGQAQPLQAV 147 P+ LP P P PAAP PP A P A P+ ++ Sbjct: 454 PIAPPLPAGMPAA---PPLPPAAPAPPPAPAPAPAAPVASI 491 Score = 25.4 bits (53), Expect = 3.8 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = +1 Query: 58 PQPIRRAPTVPAAPIPPQARPGQAQP 135 P P+ + V P PP A PG++ P Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAP 401 >SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 2670 Score = 25.4 bits (53), Expect = 3.8 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 Query: 228 NRLLHKPGQEKYAFASKTYSIFLTISV 308 N L+ KP EKY + YS+ L +SV Sbjct: 245 NVLMAKPALEKYLYHEFCYSLGLLLSV 271 >SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosaccharomyces pombe|chr 1|||Manual Length = 368 Score = 25.4 bits (53), Expect = 3.8 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = +3 Query: 201 VSRSHHSGVNRLLHKPGQEKYAFASKTYSIFL 296 V + H G+N L PG A ASK I L Sbjct: 333 VLKYHSDGINSLAFHPGSNVIALASKDTRISL 364 >SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizosaccharomyces pombe|chr 2|||Manual Length = 482 Score = 25.0 bits (52), Expect = 5.0 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = +1 Query: 22 QDPVTKALPYSHPQPIRRAPTVPAAPIPP 108 QD + A P P R A +VP P PP Sbjct: 153 QDKMASATPIYKPNQRRIAASVPDKPPPP 181 >SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 557 Score = 25.0 bits (52), Expect = 5.0 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Frame = +1 Query: 64 PIRRAPTV-PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 198 P RR V PAAP+P A P + P A P+ + P L L Sbjct: 316 PKRRPIEVKPAAPVPTPAPPVKTSPHPASYRPQPTRNVEVRPLLML 361 >SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccharomyces pombe|chr 2|||Manual Length = 1102 Score = 25.0 bits (52), Expect = 5.0 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%) Frame = +1 Query: 52 SHP---QPIRRAPTVPAA------PIPPQARPGQAQP---LQAVLLPRAVQVHRTLPPL 192 +HP QPI AP VPA PIPPQA P P V LP A + P+ Sbjct: 230 NHPMAGQPIAIAP-VPAPNQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQPV 287 >SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual Length = 578 Score = 25.0 bits (52), Expect = 5.0 Identities = 9/34 (26%), Positives = 18/34 (52%) Frame = +1 Query: 238 YTSLVKKNMPLLRKHIRYSLPSP*EYRCLIQLNT 339 Y+S+ ++P + ++ Y+ P Y C I N+ Sbjct: 441 YSSIYSNDVPAIPPNVPYTFVDPYTYACYINNNS 474 >SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 646 Score = 24.6 bits (51), Expect = 6.6 Identities = 15/51 (29%), Positives = 27/51 (52%) Frame = +1 Query: 208 GVIIQA*TDFYTSLVKKNMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCS 360 G+ Q ++FY + +N+ ++ + LP+ R LIQ+ T+ IP S Sbjct: 160 GIQAQTLSNFYMAF-SQNLVIIPVLNKVDLPTADVDRTLIQVQQTFDIPMS 209 >SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces pombe|chr 3|||Manual Length = 587 Score = 24.2 bits (50), Expect = 8.7 Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%) Frame = +1 Query: 28 PVTKALPYSHPQPIRRAPTVPAAP-IPPQARP 120 P ALP P P P VPA P IP P Sbjct: 526 PPGMALPPGMPAPFPGYPAVPAMPGIPGATAP 557 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,521,264 Number of Sequences: 5004 Number of extensions: 31396 Number of successful extensions: 127 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 125 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 154448264 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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