Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0906.Seq
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    29   0.31 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   0.53 
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   1.2  
SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51...    26   2.2  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   2.2  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    26   2.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   2.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   2.9  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   3.8  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    25   3.8  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    25   5.0  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   5.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   5.0  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   5.0  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   6.6  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    24   8.7  

>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 10  IEGNQDPVTKALPYSHPQPIRRAPTVPAAP 99
           IEG+ D V K LP     P  +AP  P AP
Sbjct: 367 IEGDDDEVAKVLPKPPSVPTIQAPIPPEAP 396


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
 Frame = +1

Query: 28  PVTKALPYSHPQP-------IRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 186
           PV    P  H  P       +  AP  PAAP+ P+A P   Q     ++P A+ V +  P
Sbjct: 521 PVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEA-PSVPQRPAVPVVPEALSVPQ--P 577

Query: 187 PLRLVFPGV 213
           P+  V P V
Sbjct: 578 PVAPVAPEV 586



 Score = 24.6 bits (51), Expect = 6.6
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
 Frame = +1

Query: 31  VTKALPYSHPQPIRRAPTVPAAPIPPQA-----RPGQAQPLQAVLLPRAVQV 171
           V +AL    P     AP VP+ P PP A      P   QP  A + P    V
Sbjct: 568 VPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSV 619


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 49  YSHPQPIRRAPTVPAAPIPPQARPGQA 129
           +S+P  ++R P +PA P+ P  RP  A
Sbjct: 220 FSYPYELQRKPLIPAHPV-PSFRPTSA 245


>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
           L51|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 145

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 80  RQCQQHRFHLKHVRGKHNHFRQFFYLGRFKYI 175
           ++ Q   FH+ + +GKH   R ++  GR K I
Sbjct: 53  KESQDVEFHVTNRQGKHPLIRAYYNTGREKVI 84


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 324 NTTKHDLEYSL*CLRFKSYLMTSNDXNDNFLFVKL 428
           N   H LE+ L C + KSY ++ +  N    FV L
Sbjct: 845 NLLPHSLEFILKCSKVKSYDISPSSINSKEAFVCL 879


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 61  QPIRRAPTVPAAPIPPQARPGQ 126
           +P+ R P +P  P+P +  PG+
Sbjct: 101 EPLPREPPLPNEPVPEEPLPGE 122


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +1

Query: 28  PVTKALPY-SHPQPI-RRAPTVPA-APIPPQARPGQAQPLQAVLL-PRAVQVHRTLPPL 192
           P T A P  S P P    AP +P+ AP  P + P  AQP   V   P A  +   +PP+
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPM 197


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 28  PVTKALPYSHPQPIRRAPTVPAAPIPPQA-RPGQAQPLQAV 147
           P+   LP   P      P  PAAP PP A  P  A P+ ++
Sbjct: 454 PIAPPLPAGMPAA---PPLPPAAPAPPPAPAPAPAAPVASI 491



 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 58  PQPIRRAPTVPAAPIPPQARPGQAQP 135
           P P+  +  V   P PP A PG++ P
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAP 401


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 228 NRLLHKPGQEKYAFASKTYSIFLTISV 308
           N L+ KP  EKY +    YS+ L +SV
Sbjct: 245 NVLMAKPALEKYLYHEFCYSLGLLLSV 271


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 201 VSRSHHSGVNRLLHKPGQEKYAFASKTYSIFL 296
           V + H  G+N L   PG    A ASK   I L
Sbjct: 333 VLKYHSDGINSLAFHPGSNVIALASKDTRISL 364


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 22  QDPVTKALPYSHPQPIRRAPTVPAAPIPP 108
           QD +  A P   P   R A +VP  P PP
Sbjct: 153 QDKMASATPIYKPNQRRIAASVPDKPPPP 181


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 64  PIRRAPTV-PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 198
           P RR   V PAAP+P  A P +  P  A   P+  +     P L L
Sbjct: 316 PKRRPIEVKPAAPVPTPAPPVKTSPHPASYRPQPTRNVEVRPLLML 361


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
 Frame = +1

Query: 52  SHP---QPIRRAPTVPAA------PIPPQARPGQAQP---LQAVLLPRAVQVHRTLPPL 192
           +HP   QPI  AP VPA       PIPPQA P    P      V LP A    +   P+
Sbjct: 230 NHPMAGQPIAIAP-VPAPNQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQPV 287


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 238 YTSLVKKNMPLLRKHIRYSLPSP*EYRCLIQLNT 339
           Y+S+   ++P +  ++ Y+   P  Y C I  N+
Sbjct: 441 YSSIYSNDVPAIPPNVPYTFVDPYTYACYINNNS 474


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 208 GVIIQA*TDFYTSLVKKNMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCS 360
           G+  Q  ++FY +   +N+ ++    +  LP+    R LIQ+  T+ IP S
Sbjct: 160 GIQAQTLSNFYMAF-SQNLVIIPVLNKVDLPTADVDRTLIQVQQTFDIPMS 209


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = +1

Query: 28  PVTKALPYSHPQPIRRAPTVPAAP-IPPQARP 120
           P   ALP   P P    P VPA P IP    P
Sbjct: 526 PPGMALPPGMPAPFPGYPAVPAMPGIPGATAP 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,521,264
Number of Sequences: 5004
Number of extensions: 31396
Number of successful extensions: 127
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)