Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0906.Seq
(429 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5) 33 0.10
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.31
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 31 0.54
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54
SB_34828| Best HMM Match : W2 (HMM E-Value=6.9) 31 0.54
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 30 0.94
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.94
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 1.2
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 29 2.2
SB_30624| Best HMM Match : AT_hook (HMM E-Value=3.3) 29 2.2
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042) 28 2.9
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 28 2.9
SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 28 2.9
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_2986| Best HMM Match : Tis11B_C (HMM E-Value=6.6) 28 3.8
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 27 5.0
SB_4272| Best HMM Match : RVT_1 (HMM E-Value=2e-28) 27 5.0
SB_2104| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 27 5.0
SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9) 24 5.6
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083) 27 6.6
SB_45852| Best HMM Match : I-set (HMM E-Value=0) 27 6.6
SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0) 27 6.6
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_6424| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_3859| Best HMM Match : Mic1 (HMM E-Value=1.3e-34) 27 6.6
SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61) 27 6.6
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083) 27 6.6
SB_39018| Best HMM Match : Crystallin (HMM E-Value=8.5) 27 6.6
SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022) 27 6.6
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53) 27 8.7
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_12652| Best HMM Match : Apo-CII (HMM E-Value=3.5) 27 8.7
SB_11994| Best HMM Match : ERM (HMM E-Value=0.28) 27 8.7
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 27 8.7
SB_48024| Best HMM Match : Band_41 (HMM E-Value=1.3) 27 8.7
SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019) 27 8.7
SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_31316| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 27 8.7
>SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5)
Length = 130
Score = 33.1 bits (72), Expect = 0.10
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Frame = +1
Query: 28 PVTKALPY-----SHPQPIRR----APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRT 180
P+T+ L Y HP P+RR P+ A+ IPP RP ++P++ P + H +
Sbjct: 13 PITRPLTYRPMRGEHP-PVRRDHDSLPSENASTIPPITRPLTSRPIRG-QHPPVRRAHDS 70
Query: 181 LPPLRLVFP 207
LP RL +P
Sbjct: 71 LPSERLDYP 79
>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 31.5 bits (68), Expect = 0.31
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +1
Query: 88 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVI 216
PA P +RP A P LP+ V R LP L VFPG++
Sbjct: 313 PATAPPSISRPATAPPPVFRGLPQLPPVFRCLPQLPPVFPGLL 355
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 30.7 bits (66), Expect = 0.54
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +1
Query: 28 PVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 189
P T +P + P +P +P AP+ P P P +A+ P LPP
Sbjct: 203 PPTPPMPETPLPP--GSPHIPPAPLHPHIPPAPPNPSKAIATPNPPMPETPLPP 254
>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 30.7 bits (66), Expect = 0.54
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 28 PVTKALPYSHPQPIRRAPTVPAAPIP-PQARPGQ 126
P K +PY P P+R+ P + P P +RPGQ
Sbjct: 484 PQIKPMPYPVPVPVRQPPMIQRFYYPVPVSRPGQ 517
>SB_34828| Best HMM Match : W2 (HMM E-Value=6.9)
Length = 184
Score = 30.7 bits (66), Expect = 0.54
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Frame = +1
Query: 19 NQDPVTKALPYSHPQP------IRRAPTVPAAPIPPQARP 120
N DP P+S P+P IRR P P PPQ+ P
Sbjct: 109 NNDPTLPTPPFSTPRPRPKAKRIRRLLPTPPPPTPPQSTP 148
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 29.9 bits (64), Expect = 0.94
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Frame = +1
Query: 16 GNQDPVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQ----AQPLQAVLLPRAVQVHRTL 183
G +P ++P S+P P VP P+PP A PG QP+Q LP + +
Sbjct: 33 GGFNPPPSSVPVSYPGPPPAMYAVPGMPMPP-AYPGMPTYPPQPMQ--FLPGTLP---GM 86
Query: 184 PPLRLVFPGVIIQA*TDFYTSLVKKNMPLLRKHIRYSLPSP 306
PP + + QA T F V PL+ + + + SP
Sbjct: 87 PPPPMFAQMMAPQAMT-FQPMPVSATAPLVTQGLTQATSSP 126
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 29.9 bits (64), Expect = 0.94
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 28 PVTKALPYSHPQP-IRRAPTVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPP 189
P + +S P P + T+P+ P+PP+A G++QP L P+A+++ PP
Sbjct: 988 PKLRKKHHSPPSPDLVFDTTLPSTPLPPKALKVLGESQPSTQRLPPKALKLLGESPP 1044
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 43 LPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 156
L Y+ P P AP P PP+ +QP QAV P
Sbjct: 484 LIYTQPSPPASAPVTPQQYQPPRHAVPTSQPYQAVQRP 521
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 28 PVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQP 135
P + P P P P+ P P+ P+ RP +QP
Sbjct: 45 PPLREPPTPAPTPPPALPSTPTLPLAPRPRPTASQP 80
>SB_30624| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 406
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 1 GGGIEGNQDPVTKALPYSHPQPIRRAPTVPAAPIPP 108
G G+ + V +A+ S+P T+PAAP PP
Sbjct: 302 GEGMRSETEQVAEAMTLSNPSIKIEEITIPAAPSPP 337
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 28.7 bits (61), Expect = 2.2
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Frame = +1
Query: 4 GGIEGNQDPVTKALPYS-HPQPIRRAPTVP--AAPIPPQARPG--QAQPLQAVLLPRAVQ 168
G E P KA P S P P R P+ P A PIPP +P ++P P
Sbjct: 1021 GPTEQPVPPKRKASPPSAQPLPPPRKPSPPPSAVPIPPPRKPSPPPSEPAPPPRQPPPPS 1080
Query: 169 VHRTLPPLR 195
+ +PP R
Sbjct: 1081 TSQPVPPPR 1089
>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
Length = 623
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 1 GGGIEGNQDPVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQP 135
GGG+ G P K+ PY+ PQ + P + P Q P
Sbjct: 465 GGGVGGGAKP--KSTPYTTPQGVSTVNPPPGLSLVQTVAPSQPPP 507
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 28.3 bits (60), Expect = 2.9
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = +1
Query: 28 PVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 207
P A P +P P PP A+P A P AV PR T PP V
Sbjct: 715 PAAAAAPQGYPPSSAPTGYQARGPAPPGAKPRVAAPYGAV--PRPGAPAATAPPGAPVGR 772
Query: 208 GVI 216
G++
Sbjct: 773 GIL 775
>SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 28.3 bits (60), Expect = 2.9
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +1
Query: 88 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVIIQA*TDFYTSLVKKNMP 267
P PIP QA PGQA P + P VQ + + P FPG + ++ T
Sbjct: 5 PMKPIPGQALPGQAIP--GMQGPYQVQPPQGVSPGMPGFPGANVSLGSNMPTMPAGTTTV 62
Query: 268 LLRKHIRYSLP 300
++ +R +P
Sbjct: 63 NFQQQVRPQVP 73
>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 1 GGGIEGNQDPVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQP 135
GGG+ G P K+ PY+ PQ + P + P Q P
Sbjct: 432 GGGVGGGAKP--KSTPYTTPQGVSTVNPPPGLSLVQTVAPSQPPP 474
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 28.3 bits (60), Expect = 2.9
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 16 GNQDPVTKALPYSHPQPIRRAPTVP----AAPIPPQARPGQAQP 135
G Q P + + P P R AP P +AP PP AR G A P
Sbjct: 284 GIQPPPPPSRGAAPPPPSRGAPPPPPSRGSAPPPPPARMGTAPP 327
>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 1 GGGIEGNQDPVTKALPYSHPQPIRRAP-TVPAAPIPP 108
GGG+ + P+ + P P P P TVP P PP
Sbjct: 425 GGGVPSHPPPLPQPPPSIIPPPTTPLPQTVPTPPRPP 461
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Frame = +1
Query: 46 PYSHPQPIRRAP-TVPAAPIPPQARPGQAQPLQA-----VLLPRAVQVHRTLPPLRLVFP 207
P + +P ++ P VP + PQA PG P+ A + P A+ + P ++F
Sbjct: 112 PENAARPAKKVPIAVPVMGVIPQAMPGMVPPVMAPAGAPIAAPMAIPTQQPDLPNNILFL 171
Query: 208 GVIIQA*TDFYTSLVKKNMP 267
+ T+ S++ P
Sbjct: 172 TNLPMETTELMLSMLFNQFP 191
>SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 392
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 222 GVNRLLHKPGQEKYAFASKTYSIFLTISVRISVFNTTKHDLEYSL 356
G + L G YA+ +++ FLT VFN+T DL+ L
Sbjct: 191 GQDYLKGMAGAANYAWVNRSSMTFLTRQAFAKVFNSTPDDLDMHL 235
>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1271
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 46 PYSHPQPIRRAPTVPAAPIP 105
PY HP+P AP P AP P
Sbjct: 157 PYYHPKPADPAPMQPPAPPP 176
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +1
Query: 7 GIEGNQDPVTKALPYSHPQPIRRAPTVPA----APIPPQARPGQAQPLQAVLLP 156
GI + TK+ P + P P + P PA AP+PP P P A L P
Sbjct: 736 GIPSPSEVTTKSPP-APPLPPKVTPKPPAPPQFAPVPPPCAPIPPMPCSAPLPP 788
>SB_2986| Best HMM Match : Tis11B_C (HMM E-Value=6.6)
Length = 308
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 225 VNRLLHKPGQEKYAFASKTYSIFLTISVRISVFNTTKHDLEYS 353
V+ LL K +E+Y + +K ++ I + N KH+L+YS
Sbjct: 49 VDNLLKKLVKEEYEYTNKIVTLGTNICDFNNTSNLKKHELDYS 91
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/42 (30%), Positives = 16/42 (38%)
Frame = +1
Query: 31 VTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 156
+TKA P + P P + PT P P P Q P
Sbjct: 15 LTKATPQTTPTPTKPTPTTHTPTKPSPTTPTSTAPTQTTPTP 56
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 73 RAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 189
R TVP P+PP P Q+ P +L+P + LPP
Sbjct: 629 RPTTVP--PLPPTPPPRQSTPPPLLLIPLLPLLTLPLPP 665
>SB_4272| Best HMM Match : RVT_1 (HMM E-Value=2e-28)
Length = 876
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +1
Query: 22 QDPVTKALPYSHPQPIRRAPTVPAA-----PIPPQARPGQAQPLQAVLLPRAVQVHRTLP 186
++ V ++LP HPQP+ + P PP+ P QP + R+ ++ T P
Sbjct: 815 EELVRESLPMQHPQPVSVELDTGSTDENHLPTPPEVNPEVTQP--PLRTTRSGRI--TKP 870
Query: 187 PLRL 198
P+RL
Sbjct: 871 PVRL 874
>SB_2104| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1219
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = +1
Query: 22 QDPVTKALPYSHPQPIRRAPTVPAA-----PIPPQARPGQAQP 135
++ V ++LP HPQP+ + P PP+ P AQP
Sbjct: 744 EELVRESLPMQHPQPVSVELDTGSTDENHLPTPPEVNPEVAQP 786
>SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 37 KALPYSHPQP--IRRAPTVPAAPIPPQARPGQAQP 135
KA P + P+P + P PAAP PP P A P
Sbjct: 209 KATPVNPPEPDYLEPTPPPPAAPAPPPP-PAAAPP 242
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 270 ASKTYSIFLTISVRISVFNTTKHDLEYSL*CLRFKSYLMTSNDXNDNFL 416
+S + S+FLT S +SVF T+ L L S +TS+ +FL
Sbjct: 560 SSSSLSVFLTSSSSLSVFLTSSSSLSDFLTSSSSLSVFLTSSSLPSDFL 608
>SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9)
Length = 706
Score = 23.8 bits (49), Expect(2) = 5.6
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 189 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC 91
W Y N + +C K C+ C WNRCC
Sbjct: 306 WSAEERYNNSCQLGHCKK-ACIG--CPDWNRCC 335
Score = 21.8 bits (44), Expect(2) = 5.6
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = -1
Query: 114 CLRWNRCCW 88
C WN+CC+
Sbjct: 346 CPSWNKCCY 354
>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
Length = 1266
Score = 27.1 bits (57), Expect = 6.6
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = +1
Query: 34 TKALPYSH-PQPIRRAPTVPAAP-IP-PQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVF 204
T A P H PQP + +PA +P P P +P QAV P Q+ P +V
Sbjct: 1044 TAAAPQHHQPQPANQVTGIPAQQRLPQPTGNPVTGRPHQAVQQPLPQQLPPQYRPPAIVT 1103
Query: 205 PGV 213
V
Sbjct: 1104 AAV 1106
>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
Length = 1122
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 77 HRQCQQHRFHLKHVRGKHN-HFRQFFYLGR 163
H Q QQH+FH H +N H+R F + R
Sbjct: 1043 HHQ-QQHQFHHHHHHTHYNYHYRHFLIIDR 1071
>SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +1
Query: 28 PVTKALPYSHPQPIRRAPTVPA--APIPPQARPGQAQPLQAVLLPRAV 165
PVTK P+ +P++ PA A + P R A A LP AV
Sbjct: 349 PVTKQEPFKQTKPVKEPSLAPAPTANMVPSDRDKPAGLQMADFLPAAV 396
>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
Length = 2276
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Frame = +1
Query: 4 GGIEGNQDP-VTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRT 180
GGI P + + P P ++ +P P+ PG +Q + +Q +
Sbjct: 1622 GGIPQQAHPSIHPQMQTQQPPPYQQPQQMPQKPVTAGPPPGAVAAVQQITRDANIQAAQA 1681
Query: 181 LPPLRLVFPG 210
P+ + PG
Sbjct: 1682 RQPMPVSTPG 1691
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/73 (23%), Positives = 29/73 (39%)
Frame = +1
Query: 1 GGGIEGNQDPVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRT 180
G I + D +T +H QP + PT+ P P + G A P + +
Sbjct: 62 GAAINPSADGITSP---NHTQPTQVLPTIQPPPTHPYRQQGPAGPPVTCQAQQGSTAQQV 118
Query: 181 LPPLRLVFPGVII 219
P + + GV++
Sbjct: 119 TPQGQQGYSGVVM 131
>SB_6424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 97 PIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 198
P P RPGQAQ L L +HR+L PL L
Sbjct: 40 PGPMARRPGQAQTLGT--LVEDAHMHRSLRPLAL 71
>SB_3859| Best HMM Match : Mic1 (HMM E-Value=1.3e-34)
Length = 525
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 1 GGGIEGNQDPVTKALPYSHPQPIRRAPTVPAAPIPPQARP 120
GGG + + D P P + PT+P AP+ P P
Sbjct: 413 GGGGDDDDDYYYDDDDVESPAPGVKPPTLPVAPVKPPTLP 452
>SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61)
Length = 314
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +1
Query: 49 YSHPQPI---RRAPTVP-AAPIPPQARPGQAQPLQAVLLP 156
++ PQP+ +P VP A+P PP ARP P + + P
Sbjct: 41 FTSPQPMPGRNSSPIVPRASPQPPTARPYGTSPGTSAMSP 80
>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
Length = 440
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 31 VTKALPYSHPQPIRRAP-TVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPPLR 195
+++ +PYS P P AP T+P P+P P QA P + PR + + PP++
Sbjct: 375 LSQGVPYSMP-PRPGAPGTMPTGPVPLLGNPPSSQAPPARG---PRPMPLFPNGPPMQ 428
>SB_39018| Best HMM Match : Crystallin (HMM E-Value=8.5)
Length = 67
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 180 RPMYLNRPR*KNCLKW-LCLPRTCLRWNRCCWHCRC 76
R Y+ + K L + +CL T LR +R C HC C
Sbjct: 22 RQRYVTHDKRKALLSFTVCLCSTHLRSDRLCVHCPC 57
>SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)
Length = 664
Score = 27.1 bits (57), Expect = 6.6
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = +1
Query: 13 EGNQDPVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAV----LLP--RAVQVH 174
E Q V LP P P + A T P P+P ++ G P+ + +LP + +
Sbjct: 463 ERRQGAVAPPLP---PLPTQGAVTTPLPPLPSRSTIGPLPPITSSASKRILPPLPSKDLK 519
Query: 175 RTLPPL 192
R+LPPL
Sbjct: 520 RSLPPL 525
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +1
Query: 58 PQPIRRAPTVPAAPIPPQARPGQAQPL---QAVLLPRAVQVHRTLPPLRLVFP 207
P +P+VP P PP +PG A + + + V+ + P RL P
Sbjct: 2311 PSTGSHSPSVPPPPPPPPEQPGDAMDIEDEEGQPSGSKILVNTPIAPTRLALP 2363
>SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53)
Length = 264
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 37 KALPYSHPQPIRRAPTVPAAPIPPQARPGQAQP 135
K++ + P P+ P P P PP PG +P
Sbjct: 66 KSMAAATPPPLCAPPPPPPPPPPPPPPPGAKKP 98
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 46 PYSHPQPIRRAPTVPAAPIPPQARP 120
P +P+ RAP P P PP A P
Sbjct: 1220 PQPYPETKSRAPPPPIHPAPPAAPP 1244
>SB_12652| Best HMM Match : Apo-CII (HMM E-Value=3.5)
Length = 140
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 28 PVTKALPYSHPQPIRRAPTVPAAPI 102
P KA +SHP+ IRR + PA +
Sbjct: 63 PKQKAASHSHPELIRRMQSTPALTV 87
>SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)
Length = 465
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 37 KALPYSHPQPIRRAPTVPAAPIPPQARPGQAQP 135
K++ + P P+ P P P PP PG +P
Sbjct: 267 KSMAAATPPPLCAPPPPPPPPPPPPPPPGAKKP 299
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 26.6 bits (56), Expect = 8.7
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Frame = +1
Query: 1 GGGIEGNQDPVTKALPYSHPQPIRR------APTVPAAPI--PPQARPGQAQPLQAVLLP 156
G GI + P +A P+S QP+ P +P+ PP A+ Q P + P
Sbjct: 206 GHGIPPSSTPQARAPPHSSTQPLSSHSGSSPQPGSAFSPVNTPPNAQAQQMTPPSSAAPP 265
Query: 157 RAVQVHRTLPPLR 195
+++ +T P L+
Sbjct: 266 QSLPGLQTSPSLQ 278
>SB_48024| Best HMM Match : Band_41 (HMM E-Value=1.3)
Length = 335
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 28 PVTKALPYSHPQPIRRAPTVPAAPI 102
P KA +SHP+ IRR + PA +
Sbjct: 63 PKQKAASHSHPELIRRMQSTPALTV 87
>SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)
Length = 1008
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 13 EGNQDPVTKALPYS-HPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 189
+G Q + P + Q +R+ PT P P P PG Q +++ H+ +
Sbjct: 152 QGQQQTPQRIAPAPPNTQNMRQTPTPPMPPKSPHGSPG-LMAAQQNSGGQSMPQHQVMQM 210
Query: 190 LRLVFPGVIIQA 225
R PG++ Q+
Sbjct: 211 ARQQMPGMVQQS 222
>SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 46 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAV 147
P S P ++P A +PPQ+ PG + P Q++
Sbjct: 1048 PQSIPGASIPPQSIPGAFLPPQSIPGASLPPQSI 1081
>SB_31316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = +1
Query: 46 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVIIQA 225
PY + +P+ A T P P+ P P A+ + ++ PLR V+ +
Sbjct: 202 PYDYLRPLLGADTKPYPPVGPAILPTDCGYKYALTVVDVASRYKADCPLRTKSAAVVSRK 261
Query: 226 *TDFY 240
D Y
Sbjct: 262 LADIY 266
>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 220 QA*TDFYTSLVKKNMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 363
Q+ +Y VK+ + H+ + P RC I+LN WS PC V
Sbjct: 738 QSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +1
Query: 58 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 189
P P R P+ P P PP P + P PR + PP
Sbjct: 206 PPPPRPPPSPPPPPPPPSPSPPRPPPPPPPSPPRPLAAKLPEPP 249
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,596,283
Number of Sequences: 59808
Number of extensions: 241276
Number of successful extensions: 1040
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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