Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0906.Seq
         (429 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    27   0.12 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.36 

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 7/14 (50%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
 Frame = -1

Query: 99  RCCWHC-RCSSYRL 61
           +CCWHC  C+ Y++
Sbjct: 604 QCCWHCFNCTQYQI 617


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.36
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 4    GGIEGNQDPVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQ 132
            GG+  +Q P+      + P P +R    P  P P  A+ GQAQ
Sbjct: 976  GGVVQSQQPIM-----TDPSPFKRGRYTP--PQPANAQQGQAQ 1011


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,574
Number of Sequences: 438
Number of extensions: 2593
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)