Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0906.Seq
(429 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 31 0.25
At2g33790.1 68415.m04144 pollen Ole e 1 allergen and extensin fa... 31 0.25
At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family... 31 0.33
At1g26150.1 68414.m03192 protein kinase family protein similar t... 30 0.58
At1g13050.1 68414.m01513 expressed protein 30 0.77
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 29 1.0
At5g65410.1 68418.m08226 zinc finger homeobox family protein / Z... 29 1.3
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 29 1.3
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 29 1.8
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 29 1.8
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 29 1.8
At5g48360.1 68418.m05975 formin homology 2 domain-containing pro... 28 2.3
At5g02400.1 68418.m00163 protein phosphatase 2C family protein /... 28 2.3
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 28 2.3
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 28 3.1
At5g61090.1 68418.m07665 proline-rich family protein contains pr... 27 4.1
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 27 4.1
At5g08520.1 68418.m01011 myb family transcription factor contain... 27 4.1
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont... 27 4.1
At5g38560.1 68418.m04662 protein kinase family protein contains ... 27 5.4
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 27 5.4
At3g09400.1 68416.m01116 protein phosphatase 2C family protein /... 27 5.4
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 27 5.4
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 27 5.4
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 27 7.1
At5g04500.1 68418.m00449 glycosyltransferase family protein 47 l... 27 7.1
At5g57625.1 68418.m07199 allergen V5/Tpx-1-related family protei... 26 9.4
At5g23150.1 68418.m02707 PWWP domain-containing protein identica... 26 9.4
At5g07150.1 68418.m00815 leucine-rich repeat family protein cont... 26 9.4
At4g04990.1 68417.m00728 expressed protein contains Pfam domain ... 26 9.4
At1g75000.1 68414.m08707 GNS1/SUR4 membrane family protein conta... 26 9.4
At1g52880.1 68414.m05979 no apical meristem (NAM) family protein... 26 9.4
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 31.5 bits (68), Expect = 0.25
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = +1
Query: 4 GGIEGNQDPVTKALPYSHPQPIRR--APTVPAAPIPPQARPGQAQPLQAVLLP 156
GG +G P P S P P +PT P +P PP P P V P
Sbjct: 66 GGDDGGYTPPAPVPPVSPPPPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPP 118
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +1
Query: 46 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 156
P P P +PT P +P PP P P V P
Sbjct: 100 PPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPP 136
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +1
Query: 46 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 156
P P P +PT P +P PP P P V P
Sbjct: 118 PPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPP 154
>At2g33790.1 68415.m04144 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245, SP|Q03211 Pistil-specific
extensin-like protein precursor (PELP) {Nicotiana
tabacum}; contains Pfam profile PF01190: Pollen proteins
Ole e I family
Length = 239
Score = 31.5 bits (68), Expect = 0.25
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +1
Query: 16 GNQDPVTKALPYSHPQPIRRAPTVP--AAPIPPQARPGQAQPLQAVLLPRAVQVHR--TL 183
G+ DP +LP P P + PT+P API A P P++ LP A + TL
Sbjct: 31 GSSDPF-HSLPQHLPLPPIKLPTLPPAKAPIKLPAYPPAKAPIKLPTLPPAKAPIKLPTL 89
Query: 184 PPLR 195
PP++
Sbjct: 90 PPIK 93
>At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family
protein identical to proline-rich protein 2 [Arabidopsis
thaliana] gi|7620011|gb|AAF64549
Length = 321
Score = 31.1 bits (67), Expect = 0.33
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 49 YSHPQPIRRAPTV-PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 192
Y P PI + P V P P PP+ +P + P V +T PPL
Sbjct: 216 YKPPVPIYKPPVVIPKKPCPPKIHKPIYKPPVPIYKPPVVIPKKTFPPL 264
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 30.3 bits (65), Expect = 0.58
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 19 NQDPVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPL-QAVLLPRAVQVHRTLPP 189
N P K +P SH P R P+ PA+ IPP R + P + P + H + PP
Sbjct: 165 NPLPPPKLVPPSHSPP-RHLPSPPASEIPPPPRHLPSPPASERPSTPPSDSEHPSPPP 221
Score = 26.2 bits (55), Expect = 9.4
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = +1
Query: 25 DPVTKALPYSH---PQPIRRAPTVP-AAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 192
+PV+ P S P P PT P +P PP P P LP LPP
Sbjct: 113 NPVSSPPPESSPPPPPPTEAPPTTPITSPSPPTNPP--PPPESPPSLPAPDPPSNPLPPP 170
Query: 193 RLVFP 207
+LV P
Sbjct: 171 KLVPP 175
>At1g13050.1 68414.m01513 expressed protein
Length = 317
Score = 29.9 bits (64), Expect = 0.77
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 46 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQ 141
P S P P+R P P+PP+ P A+PLQ
Sbjct: 68 PSSRPLPLR-----PEEPLPPRHNPNSARPLQ 94
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 29.5 bits (63), Expect = 1.0
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = +1
Query: 28 PVTKALPYSHPQPIRRAPTV--PAAPIPPQARPGQAQPLQAV--LLPRAVQVHRTLPPLR 195
PV P P PI R P + P P P PG P+ LLP LPP+
Sbjct: 109 PVVYPPPIVRPPPITRPPIIIPPIQPPPVTTPPGLLPPITTPPGLLPPVTTPPGLLPPVT 168
Query: 196 LVFPGVI 216
PG++
Sbjct: 169 TP-PGLL 174
>At5g65410.1 68418.m08226 zinc finger homeobox family protein /
ZF-HD homeobox family protein similar to hypothetical
proteins (GP|4220524)(GP|3184285|)(Arabidopsis); ZP-HD
homeobox family protein GP|13374061 (Flaveria
bidentis);GP:5091602 {Oryza sativa}
Length = 279
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Frame = +1
Query: 37 KALPYSHPQPIRRAPTVPA-------APIPPQARPGQAQPLQAVLLP 156
K LPY H P + P P AP+ + P QA PLQ L P
Sbjct: 123 KELPYFHHAPPQHQPPPPPPGFYRLPAPVSYRPPPSQAPPLQLALPP 169
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 46 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTL 183
P HPQ ++P +P+ P+++ L+ + V+ HR L
Sbjct: 47 PLFHPQSPPEPKSLPLSPLSPKSKEEPESQTMTPLMSKHVKTHRNL 92
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +1
Query: 58 PQPIRRAPTVPAAPIPPQARPG-QAQPLQAVLLPRAVQVHRTLPPLRLVFPG 210
P P R +P P PP P A+ L P V+ LPP L+F G
Sbjct: 58 PPPAMRRRVLPRPPPPPPPLPMFDAEVLCCCYPPTRVRREAPLPPPPLIFVG 109
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = +1
Query: 46 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 189
P P P+RR +P P PP R P + R V PP
Sbjct: 27 PPPPPPPMRRRAPLPPPPPPPMRRRAPLPPPPPPAMRRRVLPRPPPPP 74
>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 340
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 19 NQDPVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 186
+Q P T L P P + ++P+ P PP + A+P+ + + + RT P
Sbjct: 185 HQIPTTIVLSLPPPPPQSLSLSLPSPPQPPPSSSFHAEPIPPTVGTSSTKRRRTTP 240
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 46 PYSHPQPIRRAPTVPA--APIPPQARPGQAQPL 138
P+ HP P ++P P AP+ P A+P P+
Sbjct: 60 PHPHPHPPAKSPVKPPVKAPVSPPAKPPVKPPV 92
>At5g48360.1 68418.m05975 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 782
Score = 28.3 bits (60), Expect = 2.3
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = +1
Query: 46 PYSHPQ-PIRRAPTVPAAPIPPQAR------PGQAQPLQAVLLPRAVQVHRTLPPLRL 198
P S P P+ +P P P+PP P + A++LPR+ + H T P L L
Sbjct: 47 PISPPFFPLESSPPSPPPPLPPTPPTTFAVFPTFPANISALVLPRSSKPHHTSPTLLL 104
>At5g02400.1 68418.m00163 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2c
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 674
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -3
Query: 370 NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKAYFS 254
+L H+K S+ ++L++D L E N E +FE +++ S
Sbjct: 575 SLCHHKLTSRDKFLILSSDGLYEYFSNQEAIFEVESFIS 613
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 46 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQ 168
P+ HP AP P P+PP P Q+ P L R+ Q
Sbjct: 19 PHLHPPS---APLPPPPPLPPPPPPRQSHPESPNLYGRSTQ 56
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 49 YSHPQPIRRAPTVPAAPIPPQARP 120
YS P P+ P P P+PP P
Sbjct: 809 YSPPPPVFSPPPKPVTPLPPATSP 832
>At5g61090.1 68418.m07665 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420;
common family members: At4g18570, At3g25690, At4g04980
[Arabidopsis thaliana]
Length = 344
Score = 27.5 bits (58), Expect = 4.1
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Frame = +1
Query: 34 TKALPYSHPQ-PIRRAPT-VPAAPIPPQARPGQAQPLQAVLLP---RAVQVHRTLPPLR 195
T P S P PI P VPA P P RP A+P + P R + +TL P R
Sbjct: 100 TPEAPRSVPACPIPEIPRPVPARPTPETPRPVTARPTPEIPRPVPARPISEVQTLVPTR 158
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 55 HPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQV--HRTLPP 189
HPQ + P +P +PP + PL LPR +Q+ H +PP
Sbjct: 580 HPQQMLPMPNMPHHQLPPSSH----MPLHPHHLPRPMQMPPHGHMPP 622
>At5g08520.1 68418.m01011 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 298
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +1
Query: 46 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPL--QAVLLPRAVQVHR 177
P + P P A V AAP+P PG A + +PR HR
Sbjct: 253 PVNLPAPPHMAYGVHAAPVPGSVVPGAAMNIGQMPYTMPRTPTAHR 298
>At1g49750.1 68414.m05579 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560
Length = 494
Score = 27.5 bits (58), Expect = 4.1
Identities = 27/98 (27%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Frame = +1
Query: 1 GGGIEGNQDPVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPL-----QAVLLPRAV 165
GGG + N P P P P P P PP P P LP
Sbjct: 39 GGGNDNNPPPSPSPEPEPEPADCPPPPPPPPCPPPPSPPPCPPPPSPPPSPPPPQLPPPP 98
Query: 166 QVHRTLPPLRLVFPGVIIQA*TDFYTSLVKKNMPLLRK 279
Q+ PP P F +SL+KK P+L++
Sbjct: 99 QLPPPAPPKPQPSPPT---PDLPFASSLLKKVYPVLQR 133
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +1
Query: 58 PQPIRRAPTVPAAPIP--PQARPGQAQP 135
P P++ PT P+AP P P P Q+ P
Sbjct: 22 PPPLQTQPTTPSAPPPVTPPPSPPQSPP 49
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains Pfam
profile PF00730: HhH-GPD superfamily base excision DNA
repair protein
Length = 1729
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 58 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 156
P P R+ T P+PP++ P A P+ + LP
Sbjct: 1402 PAPEERSLTSATIPVPPESYPPVAIPMIELPLP 1434
>At3g09400.1 68416.m01116 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2c
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 650
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 370 NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKAYFS 254
+L H++ S+ ++L++D L E N E +FE ++ S
Sbjct: 551 SLHHHRLSSRDKFLILSSDGLYEYFSNEEAIFEVDSFIS 589
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 27.1 bits (57), Expect = 5.4
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 28 PVTKALPYS-HPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRA 162
PV+ P + P P+ AP PA P PP + P A P A P A
Sbjct: 47 PVSAPPPVTTSPPPVTTAPP-PANPPPPVSSPPPASPPPATPPPVA 91
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Frame = +1
Query: 28 PVTKALPYSHPQPIRRAPTVP---AAPIPPQARPGQAQPLQAVLLPRA 162
P P S P P P P A+P PP A P A P P A
Sbjct: 67 PANPPPPVSSPPPASPPPATPPPVASPPPPVASPPPATPPPVATPPPA 114
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 27.1 bits (57), Expect = 5.4
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 28 PVTKALPYS-HPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRA 162
PV+ P + P P+ AP PA P PP + P A P A P A
Sbjct: 47 PVSAPPPVTTSPPPVTTAPP-PANPPPPVSSPPPASPPPATPPPVA 91
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Frame = +1
Query: 28 PVTKALPYSHPQPIRRAPTVP---AAPIPPQARPGQAQPLQAVLLPRA 162
P P S P P P P A+P PP A P A P P A
Sbjct: 67 PANPPPPVSSPPPASPPPATPPPVASPPPPVASPPPATPPPVATPPPA 114
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 26.6 bits (56), Expect = 7.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 58 PQPIRRAPTVPAAPI-PPQARPGQAQPLQAVLLP-RAVQVHRTLPPLRL 198
P P + PT+P PI PP +P P++ +P V+ + PP++L
Sbjct: 55 PTPSYKPPTLPTTPIKPPTTKP----PVKPPTIPVTPVKPPVSTPPIKL 99
>At5g04500.1 68418.m00449 glycosyltransferase family protein 47 low
similarity to Exostosin-like 2, Homo sapiens
[SP|Q9UBQ6], EXTL2, Mus musculus [GI:10443633]
Length = 765
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 128 HNHFRQFFYLGRFKYIGRFLHFV*CF 205
HNH ++ Y+ + RFL F CF
Sbjct: 23 HNHHHRYKYISNYGVGRRFLFFASCF 48
>At5g57625.1 68418.m07199 allergen V5/Tpx-1-related family protein
low similarity to SP|Q40374 Pathogenesis-related protein
PR-1 precursor {Medicago truncatula}; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 207
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 43 LPYSHPQPIRRAPTVPAAPIPPQAR 117
LP P+P+ R PT P+ P AR
Sbjct: 49 LPSPSPKPVYRPPTTPSLPAGSIAR 73
>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
cDNA putative transcription factor (HUA2) GI:4868119;
contains Pfam profile PF00855: PWWP domain
Length = 1392
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +1
Query: 43 LPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 156
LP P P+ P P P PP P A L P
Sbjct: 1064 LPQESPPPLPPLPPSPPPPSPPLPPSSLPPPPPAALFP 1101
>At5g07150.1 68418.m00815 leucine-rich repeat family protein
contains weak similarity to LRR receptor-like protein
kinase [Nicotiana tabacum] gi|7672732|gb|AAF66615;
contains Pfam PF00560 domain Leucine Rich Repeat
Length = 553
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 88 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVII 219
P P P Q P Q P Q +P AV ++ + GV++
Sbjct: 195 PVPPPPAQPPPAQTPPPQLSEVPHAVNKKKSHKSKMYIIVGVLV 238
>At4g04990.1 68417.m00728 expressed protein contains Pfam domain
PF05553: Cotton fiber expressed protein
Length = 303
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +1
Query: 4 GGIEGNQDPVTKALPYSHPQPI--RRAPTVPAAPIPPQARPG 123
GG G P + P + +P+ RR PTVP P G
Sbjct: 122 GGSYGVSSPEVRFFPTAPEKPVGLRRPPTVPVKTFPQDNTSG 163
>At1g75000.1 68414.m08707 GNS1/SUR4 membrane family protein contains
Pfam profile PF01151: GNS1/SUR4 family
Length = 281
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 140 RQFFYLGRFKYIGRFLHFV*CFQESSFRREQTFTQAWSRKICLC 271
R FF+ F Y+ RFLH F RR+ +F Q ++ LC
Sbjct: 125 RVFFWSYAF-YLSRFLHLFRTFFSVIRRRKLSFFQLINQSSLLC 167
>At1g52880.1 68414.m05979 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to NAM (no apical meristem) GB:CAA63101 from
[Petunia x hybrida]; identical to cDNA NAC domain
protein GI:4325285
Length = 320
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 92 QHRFHLKHVRGKHNHFRQFFYLG--RFKYIGRFLHFV*CFQESS 217
+H HL H+ ++H R + RF+++ LHF F +++
Sbjct: 184 RHHHHLHHIHLDNDHHRHDMMIDDDRFRHVPPGLHFPAIFSDNN 227
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,905,239
Number of Sequences: 28952
Number of extensions: 165062
Number of successful extensions: 697
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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