Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0903.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    26   0.22 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   0.87 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   4.7  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   6.2  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 489 KWPTGLRYRISFLDCFV 439
           +W   +R+ +SF DCFV
Sbjct: 183 RWQNSIRHSLSFNDCFV 199


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 0.87
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = -2

Query: 444 FVCISECFTLHLLILINLSIKFXC-----MCIFXFSR 349
           F C    FT+HLL L+ +   F C     +CI+ F R
Sbjct: 268 FCCAFIIFTMHLLFLLCI-YYFYCALIILLCIYYFCR 303



 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 468 YRISFLDCFVCISECFTLHLLILI 397
           Y +  +  F C+S  F +HLL L+
Sbjct: 51  YNLRRIYYFYCVSITFNVHLLFLL 74



 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 444 FVCISECFTLHLLILINLSIKFXCMCIF 361
           F C    FT+HLL L+ +   F    IF
Sbjct: 149 FYCAFIIFTVHLLFLLCIYHFFCAFIIF 176


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 498  ISLKWPTGLRYRISFLD 448
            I +KWP G+R  I++++
Sbjct: 1293 IHVKWPLGVRTNITYIE 1309


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 498  ISLKWPTGLRYRISFLD 448
            I +KWP G+R  I++++
Sbjct: 1293 IHVKWPLGVRTNITYIE 1309


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 255  HEVLKKFYGHIVSLSTHAIKCTCLD 329
            H V+ +F G+ + L T  +   C++
Sbjct: 1236 HNVIGQFLGYFIGLITFVMSQHCVE 1260


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 449 SRNEIRYLRPV 481
           SR +IR+LRP+
Sbjct: 4   SRRDIRFLRPI 14


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,235
Number of Sequences: 336
Number of extensions: 2093
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)