Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0903.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    44   1e-05
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    29   0.29 
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    29   0.39 
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    26   3.6  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    25   4.8  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   4.8  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    25   6.3  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    25   8.4  

>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 22/78 (28%), Positives = 39/78 (50%)
 Frame = +1

Query: 10  VKSDFKINSCKELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITKELLDIIVQM 189
           +K++ +     EL ++++   K +   HD+SRV+Q  +K   +     I  EL    V +
Sbjct: 146 IKAEERKTIIAELFDLIRTNVKQLVFKHDMSRVVQTCVKFGSKQQRETICAELAGSYVDL 205

Query: 190 GQSKYAHHSVKRILKYGT 243
            +S Y  +   +I KYGT
Sbjct: 206 CKSPYGKYLAIKIFKYGT 223


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 37  CKELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITKELL 171
           CKE  ++  GQ + IAL   L R  ++L+   P   ++ ITK L+
Sbjct: 566 CKEA-SLSGGQQQRIALARALLRDTEILILDEPTSALDPITKNLV 609


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 13/74 (17%), Positives = 41/74 (55%)
 Frame = +1

Query: 19  DFKINSCKELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITKELLDIIVQMGQS 198
           ++ +N    ++N L+G++  +A+  + S V+Q + ++  E    E  +E++  +  + + 
Sbjct: 497 EYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLDGIARG 556

Query: 199 KYAHHSVKRILKYG 240
           ++ +  V+ +++ G
Sbjct: 557 QWGNWVVQHMVENG 570


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +1

Query: 214 SVKRILKYGTDCISMRF*RSFMDILYPCQLMLLSAPAWIMHMGSLPRKXKNAHAXEFY 387
           S + I   G  CI+  F  SF    YP + + +S P W  H     R      + ++Y
Sbjct: 134 SAQSISGTGALCIAANFLASF----YPSKTIYVSDPTWGNHKNVFSRAGLTVKSYKYY 187


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 380 SCACAFFXFRGKLPICII 327
           +C  ++F F+GKL IC +
Sbjct: 177 NCLLSYFAFKGKLDICSV 194


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 371 CAFFXFRGKLPICIIQAGALNSMS*QGYN 285
           C+F+ F G  PICI   G+++S    GY+
Sbjct: 442 CSFYFFIG--PICICLLGSISSYLLLGYH 468


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 374 HXNFMERFXRIKRCKVKHSEMHTKQSRNEIRYLRPVGH 487
           H    +RF      K KH E   K+ RNE+  L+ + H
Sbjct: 49  HRQTKQRFALKCINKKKHDEHKIKKLRNEVLLLQSLNH 86


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 106 VIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVKRILK 234
           VIQ +++H  E     I   LL  +     ++YA   V+R L+
Sbjct: 456 VIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVERALR 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,444
Number of Sequences: 5004
Number of extensions: 36184
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)