Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0903.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1240 + 35181983-35182615,35183025-35183856,35183936-351844... 36 0.014
04_01_0522 - 6865049-6865131,6865214-6865388,6865692-6865877,686... 33 0.13
05_01_0072 - 486211-486254,486350-486524,486658-486852,487489-48... 33 0.17
01_07_0344 - 42869465-42869502,42869597-42869771,42869923-428701... 33 0.17
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 32 0.22
01_06_1320 + 36272716-36273339,36274222-36275762,36276349-362764... 31 0.51
08_02_0955 + 22994266-22995630 29 2.1
09_04_0609 - 18929600-18929646,18929753-18929924,18930304-189304... 27 6.3
11_01_0215 + 1691421-1691500,1692258-1692390,1692524-1692762,169... 27 8.4
>02_05_1240 + 35181983-35182615,35183025-35183856,35183936-35184497,
35184581-35184722,35184832-35184939,35185055-35185267,
35185355-35185465,35185684-35185878,35186094-35186268,
35186379-35186413
Length = 1001
Score = 36.3 bits (80), Expect = 0.014
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +1
Query: 106 VIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKYGT 243
VIQ +L+H D + I K+L IV+M Q K+A + V++ L +G+
Sbjct: 865 VIQHVLQHGKPDERSAIIKQLAGQIVKMSQQKFASNVVEKCLSFGS 910
Score = 29.9 bits (64), Expect = 1.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 261 VLKKFYGHIVSLSTHAIKC 317
++ FYGH+V LSTH C
Sbjct: 808 IISAFYGHVVELSTHPYGC 826
>04_01_0522 -
6865049-6865131,6865214-6865388,6865692-6865877,
6866489-6866599,6866678-6866890,6867446-6867553,
6867632-6867773,6867855-6868951,6871287-6871559
Length = 795
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +1
Query: 106 VIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKYGT 243
V+Q +L+H + + I ++L +V + Q KYA + V++ L +GT
Sbjct: 646 VVQHVLEHGRPEERSSIIQKLSGQVVNLSQQKYASNVVEKCLSFGT 691
>05_01_0072 -
486211-486254,486350-486524,486658-486852,487489-487599,
487693-487905,488432-488539,488621-488762,489157-490418,
490460-490480,490842-491228
Length = 885
Score = 32.7 bits (71), Expect = 0.17
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 106 VIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKYG 240
V+Q +L+H + I ++L+ IVQM Q K+A + +++ L +G
Sbjct: 746 VVQHVLEHGKPHERSAIIEKLIGQIVQMSQQKFASNVIEKCLAFG 790
>01_07_0344 -
42869465-42869502,42869597-42869771,42869923-42870117,
42870678-42870788,42870899-42871111,42871551-42871658,
42871732-42871873,42872150-42873449,42874032-42874085,
42874491-42874923
Length = 922
Score = 32.7 bits (71), Expect = 0.17
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 106 VIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKYG 240
V+Q +L+H + I ++L+ IVQM Q K+A + +++ L +G
Sbjct: 785 VVQHVLEHGKPHERSAIIEKLIGQIVQMSQQKFASNVIEKCLAFG 829
>12_02_0858 + 23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 32.3 bits (70), Expect = 0.22
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = +1
Query: 103 RVIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKYGTDCISMRF*RSFM 279
RVIQ +L++ I +E+++ + M + +YA++ V+ IL++G + + F+
Sbjct: 997 RVIQRILEYFDSSIQEIFLEEIIEEVYYMAKDQYANYVVQNILQHGKALVRSAIIKKFI 1055
Score = 29.9 bits (64), Expect = 1.2
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +1
Query: 19 DFKINSCKELH-NMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITKELLDIIVQMGQ 195
D KI KEL+ N++K + A + V+Q ++H P I + + +V++
Sbjct: 937 DQKIQIAKELNSNIMKCIHDPNA-----NHVVQKCIEHVPPRFIQFFVESMYGRVVELSV 991
Query: 196 SKYAHHSVKRILKYGTDCISMRF*RSFMDILY 291
Y ++RIL+Y I F ++ +Y
Sbjct: 992 HPYGCRVIQRILEYFDSSIQEIFLEEIIEEVY 1023
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/68 (25%), Positives = 37/68 (54%)
Frame = +1
Query: 40 KELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSV 219
+E++ M K QY + V+Q +L+H + + I K+ + +V M + K+A + +
Sbjct: 1020 EEVYYMAKDQYANY--------VVQNILQHGKALVRSAIIKKFIGRVVAMSKQKFASNVI 1071
Query: 220 KRILKYGT 243
++ L +G+
Sbjct: 1072 EKCLIFGS 1079
>01_06_1320 + 36272716-36273339,36274222-36275762,36276349-36276490,
36276622-36276729,36276814-36277026,36277113-36277223,
36278056-36278250,36278874-36279048,36279189-36279226
Length = 1048
Score = 31.1 bits (67), Expect = 0.51
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +1
Query: 106 VIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKYG 240
V+Q +L+H + I ++L I+QM Q K+A + V++ L +G
Sbjct: 911 VVQHVLEHGKPHERSVIIEKLAGQIIQMSQQKFASNVVEKCLTFG 955
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 100 SRVIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKYGTD 246
+ VIQ ++ PED I I +V + Y ++R+L++ TD
Sbjct: 836 NHVIQKCIECVPEDSIQFIISTFYGQVVPLSTHPYGCRVIQRVLEHCTD 884
>08_02_0955 + 22994266-22995630
Length = 454
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 43 ELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITK 162
+LHNM++GQ A T LS ++ LKH I+ +TK
Sbjct: 224 KLHNMIRGQLSVKASTTQLSDKVR-RLKHKYNLILTRVTK 262
>09_04_0609 - 18929600-18929646,18929753-18929924,18930304-18930498,
18930691-18930801,18930885-18931097,18931643-18931720,
18931894-18932001,18932175-18932316,18932413-18933761,
18934492-18935121
Length = 1014
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 106 VIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKYG 240
V+Q +L+ E +I +L +V M Q+K+A + ++R ++G
Sbjct: 875 VVQHVLEKGNEHERGQIITKLAGQVVPMSQNKFASNVIERCFEHG 919
>11_01_0215 +
1691421-1691500,1692258-1692390,1692524-1692762,
1692884-1693055,1693133-1693327
Length = 272
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 55 MLKGQYKSIALTHDLSRVIQV-LLKHSPEDIINEITKELLDIIVQMGQ 195
+ K K + + LS +Q + K PED I+ + L D+++Q G+
Sbjct: 200 LFKIDEKHLVICLRLSTPLQASIAKGHPEDAIDSFRRTLSDVVIQEGE 247
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,646,352
Number of Sequences: 37544
Number of extensions: 205588
Number of successful extensions: 503
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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