BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0903.Seq (499 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70 SB_5417| Best HMM Match : Phage_fiber (HMM E-Value=6.6) 29 2.1 SB_54290| Best HMM Match : Pkinase (HMM E-Value=1.3e-26) 29 2.8 SB_23011| Best HMM Match : Mo-nitro_C (HMM E-Value=1.4) 29 2.8 SB_33196| Best HMM Match : Toxin_9 (HMM E-Value=8.6) 28 4.9 SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98) 27 6.5 SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30) 27 6.5 SB_51853| Best HMM Match : Integrase_Zn (HMM E-Value=4.2) 27 6.5 SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5 SB_15118| Best HMM Match : IncA (HMM E-Value=0.44) 27 6.5 SB_999| Best HMM Match : DUF1279 (HMM E-Value=1.2) 27 6.5 SB_10108| Best HMM Match : RVP (HMM E-Value=2.7) 27 8.6 SB_24319| Best HMM Match : DUF1279 (HMM E-Value=0.58) 27 8.6 >SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1390 Score = 30.7 bits (66), Expect = 0.70 Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Frame = +1 Query: 61 KGQYKSIALTHDLS-RVIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKY 237 +GQ +++ TH RVIQ +L+H + I E+ D ++ Q +Y ++ ++ +L++ Sbjct: 1199 QGQVYALS-THPYGCRVIQRILEHCLTEQTLPILNEMHDQTDRLVQDQYGNYVIQHVLEH 1257 Query: 238 GT 243 GT Sbjct: 1258 GT 1259 >SB_5417| Best HMM Match : Phage_fiber (HMM E-Value=6.6) Length = 164 Score = 29.1 bits (62), Expect = 2.1 Identities = 12/39 (30%), Positives = 22/39 (56%) Frame = +3 Query: 231 EIWNRLH*HEVLKKFYGHIVSLSTHAIKCTCLDYAYGEF 347 EI R+H HEV + + H +S HA + + +Y + ++ Sbjct: 65 EISTRVHAHEVSTRVHAHEISTRVHAHEISTREYTHMKY 103 >SB_54290| Best HMM Match : Pkinase (HMM E-Value=1.3e-26) Length = 239 Score = 28.7 bits (61), Expect = 2.8 Identities = 13/46 (28%), Positives = 23/46 (50%) Frame = +1 Query: 85 LTHDLSRVIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVK 222 + HDL +++ L H ED I ++LLD + + + H +K Sbjct: 67 MDHDLMGLLESGLVHLTEDHIKSFIRQLLDGLNYCHKKNFLHRDIK 112 >SB_23011| Best HMM Match : Mo-nitro_C (HMM E-Value=1.4) Length = 420 Score = 28.7 bits (61), Expect = 2.8 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +1 Query: 37 CKELHNMLKGQYKSIALTHDLSRVIQVLLKHSP 135 C ELH + +G + I + HD RV ++ +H P Sbjct: 334 CAELHGV-RGFLQLIVVAHDALRVYHLIARHQP 365 >SB_33196| Best HMM Match : Toxin_9 (HMM E-Value=8.6) Length = 265 Score = 27.9 bits (59), Expect = 4.9 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Frame = +3 Query: 267 KKFYGHIVSLSTHAIKCTCL-DYAYGEFASKXEKC 368 +KF+ H++ +T C DY G FA + E C Sbjct: 27 EKFWLHVIPCNTTLTSSNCEGDYVSGRFARRLENC 61 >SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98) Length = 731 Score = 27.5 bits (58), Expect = 6.5 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +1 Query: 37 CKELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIIN 150 C E H + G + I +THD RV + +H P I+ Sbjct: 157 CAERHGVC-GFLQFIVVTHDALRVYHQIARHQPHSCIS 193 >SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30) Length = 289 Score = 27.5 bits (58), Expect = 6.5 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -2 Query: 489 KWPTGLRYRISFLDCFVCI 433 +W LR+ +SF DCFV I Sbjct: 13 RWQNSLRHNLSFNDCFVKI 31 >SB_51853| Best HMM Match : Integrase_Zn (HMM E-Value=4.2) Length = 380 Score = 27.5 bits (58), Expect = 6.5 Identities = 11/47 (23%), Positives = 25/47 (53%) Frame = +1 Query: 259 RF*RSFMDILYPCQLMLLSAPAWIMHMGSLPRKXKNAHAXEFYGEIY 399 R +++ +PCQ++ +S ++ M +P + A +F+G +Y Sbjct: 239 RMVEAYIQHCHPCQVVTVSQERELLLMSRIPSEACQEVAIDFFGVLY 285 >SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1388 Score = 27.5 bits (58), Expect = 6.5 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +1 Query: 124 KHSPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKYGTDC 249 KH PED E + D++ ++ Q+ S KR +K TDC Sbjct: 104 KHDPEDDRGESGSDKEDVVYELRQT-----STKRSVKMRTDC 140 >SB_15118| Best HMM Match : IncA (HMM E-Value=0.44) Length = 835 Score = 27.5 bits (58), Expect = 6.5 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +1 Query: 37 CKELHNMLKGQYKSIALTHDLSRVIQVLLKHSP 135 C ELH + +G + I + HD RV + +H P Sbjct: 390 CAELHGV-RGFLQLIVVAHDALRVYHQIARHQP 421 >SB_999| Best HMM Match : DUF1279 (HMM E-Value=1.2) Length = 637 Score = 27.5 bits (58), Expect = 6.5 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +1 Query: 37 CKELHNMLKGQYKSIALTHDLSRVIQVLLKHSP 135 C ELH + +G + I + HD RV + +H P Sbjct: 386 CAELHRV-RGFLQLIVVAHDALRVYHQIARHQP 417 >SB_10108| Best HMM Match : RVP (HMM E-Value=2.7) Length = 288 Score = 27.1 bits (57), Expect = 8.6 Identities = 13/62 (20%), Positives = 32/62 (51%) Frame = +1 Query: 7 VVKSDFKINSCKELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITKELLDIIVQ 186 V++ +IN + +++G ++ + + ++ +L +PE ++E+ E DII+ Sbjct: 226 VIEELIRINDNVDCVGLIRGAFQGVNKAK-VGTLVNLLRDSNPEQELDEVKAEKRDIIIP 284 Query: 187 MG 192 G Sbjct: 285 KG 286 >SB_24319| Best HMM Match : DUF1279 (HMM E-Value=0.58) Length = 383 Score = 27.1 bits (57), Expect = 8.6 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +1 Query: 37 CKELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDII-NEITKELLDIIVQM 189 C E H + G + I + HD RV + +H P+ + + K+L ++ +++ Sbjct: 300 CAERHGVC-GFLQFIVIAHDALRVYHQIARHQPQSFFYDRVFKQLRELHLRL 350 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,092,063 Number of Sequences: 59808 Number of extensions: 268385 Number of successful extensions: 543 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 497 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 539 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1075029208 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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