Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0903.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.70 
SB_5417| Best HMM Match : Phage_fiber (HMM E-Value=6.6)                29   2.1  
SB_54290| Best HMM Match : Pkinase (HMM E-Value=1.3e-26)               29   2.8  
SB_23011| Best HMM Match : Mo-nitro_C (HMM E-Value=1.4)                29   2.8  
SB_33196| Best HMM Match : Toxin_9 (HMM E-Value=8.6)                   28   4.9  
SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98)              27   6.5  
SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30)             27   6.5  
SB_51853| Best HMM Match : Integrase_Zn (HMM E-Value=4.2)              27   6.5  
SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_15118| Best HMM Match : IncA (HMM E-Value=0.44)                     27   6.5  
SB_999| Best HMM Match : DUF1279 (HMM E-Value=1.2)                     27   6.5  
SB_10108| Best HMM Match : RVP (HMM E-Value=2.7)                       27   8.6  
SB_24319| Best HMM Match : DUF1279 (HMM E-Value=0.58)                  27   8.6  

>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +1

Query: 61   KGQYKSIALTHDLS-RVIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKY 237
            +GQ  +++ TH    RVIQ +L+H   +    I  E+ D   ++ Q +Y ++ ++ +L++
Sbjct: 1199 QGQVYALS-THPYGCRVIQRILEHCLTEQTLPILNEMHDQTDRLVQDQYGNYVIQHVLEH 1257

Query: 238  GT 243
            GT
Sbjct: 1258 GT 1259


>SB_5417| Best HMM Match : Phage_fiber (HMM E-Value=6.6)
          Length = 164

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 231 EIWNRLH*HEVLKKFYGHIVSLSTHAIKCTCLDYAYGEF 347
           EI  R+H HEV  + + H +S   HA + +  +Y + ++
Sbjct: 65  EISTRVHAHEVSTRVHAHEISTRVHAHEISTREYTHMKY 103


>SB_54290| Best HMM Match : Pkinase (HMM E-Value=1.3e-26)
          Length = 239

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 85  LTHDLSRVIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVK 222
           + HDL  +++  L H  ED I    ++LLD +    +  + H  +K
Sbjct: 67  MDHDLMGLLESGLVHLTEDHIKSFIRQLLDGLNYCHKKNFLHRDIK 112


>SB_23011| Best HMM Match : Mo-nitro_C (HMM E-Value=1.4)
          Length = 420

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 37  CKELHNMLKGQYKSIALTHDLSRVIQVLLKHSP 135
           C ELH + +G  + I + HD  RV  ++ +H P
Sbjct: 334 CAELHGV-RGFLQLIVVAHDALRVYHLIARHQP 365


>SB_33196| Best HMM Match : Toxin_9 (HMM E-Value=8.6)
          Length = 265

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 267 KKFYGHIVSLSTHAIKCTCL-DYAYGEFASKXEKC 368
           +KF+ H++  +T      C  DY  G FA + E C
Sbjct: 27  EKFWLHVIPCNTTLTSSNCEGDYVSGRFARRLENC 61


>SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98)
          Length = 731

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 37  CKELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIIN 150
           C E H +  G  + I +THD  RV   + +H P   I+
Sbjct: 157 CAERHGVC-GFLQFIVVTHDALRVYHQIARHQPHSCIS 193


>SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30)
          Length = 289

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 489 KWPTGLRYRISFLDCFVCI 433
           +W   LR+ +SF DCFV I
Sbjct: 13  RWQNSLRHNLSFNDCFVKI 31


>SB_51853| Best HMM Match : Integrase_Zn (HMM E-Value=4.2)
          Length = 380

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = +1

Query: 259 RF*RSFMDILYPCQLMLLSAPAWIMHMGSLPRKXKNAHAXEFYGEIY 399
           R   +++   +PCQ++ +S    ++ M  +P +     A +F+G +Y
Sbjct: 239 RMVEAYIQHCHPCQVVTVSQERELLLMSRIPSEACQEVAIDFFGVLY 285


>SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1388

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 124 KHSPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKYGTDC 249
           KH PED   E   +  D++ ++ Q+     S KR +K  TDC
Sbjct: 104 KHDPEDDRGESGSDKEDVVYELRQT-----STKRSVKMRTDC 140


>SB_15118| Best HMM Match : IncA (HMM E-Value=0.44)
          Length = 835

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 37  CKELHNMLKGQYKSIALTHDLSRVIQVLLKHSP 135
           C ELH + +G  + I + HD  RV   + +H P
Sbjct: 390 CAELHGV-RGFLQLIVVAHDALRVYHQIARHQP 421


>SB_999| Best HMM Match : DUF1279 (HMM E-Value=1.2)
          Length = 637

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 37  CKELHNMLKGQYKSIALTHDLSRVIQVLLKHSP 135
           C ELH + +G  + I + HD  RV   + +H P
Sbjct: 386 CAELHRV-RGFLQLIVVAHDALRVYHQIARHQP 417


>SB_10108| Best HMM Match : RVP (HMM E-Value=2.7)
          Length = 288

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/62 (20%), Positives = 32/62 (51%)
 Frame = +1

Query: 7   VVKSDFKINSCKELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITKELLDIIVQ 186
           V++   +IN   +   +++G ++ +     +  ++ +L   +PE  ++E+  E  DII+ 
Sbjct: 226 VIEELIRINDNVDCVGLIRGAFQGVNKAK-VGTLVNLLRDSNPEQELDEVKAEKRDIIIP 284

Query: 187 MG 192
            G
Sbjct: 285 KG 286


>SB_24319| Best HMM Match : DUF1279 (HMM E-Value=0.58)
          Length = 383

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 37  CKELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDII-NEITKELLDIIVQM 189
           C E H +  G  + I + HD  RV   + +H P+    + + K+L ++ +++
Sbjct: 300 CAERHGVC-GFLQFIVIAHDALRVYHQIARHQPQSFFYDRVFKQLRELHLRL 350


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,092,063
Number of Sequences: 59808
Number of extensions: 268385
Number of successful extensions: 543
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)