Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0903.Seq
         (499 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    23   5.8  
AJ618920-1|CAF01999.1|  204|Anopheles gambiae putative odorant-b...    23   7.6  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    23   7.6  

>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = +1

Query: 103 RVIQVLLKHSPEDIINEITKELLDIIVQMGQSKY 204
           R+ ++LL   P D++ E+    ++  +++ +SK+
Sbjct: 360 RLPKLLLMRVPNDLLKELAANKINYGIKISKSKF 393


>AJ618920-1|CAF01999.1|  204|Anopheles gambiae putative
           odorant-binding protein OBPjj4 protein.
          Length = 204

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 403 NQKMQGEALRDAYKAVQK*NP 465
           N+K+ G A R A + V K NP
Sbjct: 95  NEKVDGPAFRKAIEPVVKANP 115


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 7/21 (33%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +3

Query: 255 HEVLKKFYGHIVSLST-HAIK 314
           H+ +++FY H+++  T HA++
Sbjct: 272 HQEIEQFYAHMIATPTEHALR 292


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 494,659
Number of Sequences: 2352
Number of extensions: 9078
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 44400195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)