Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0903.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical pr...    54   6e-08
D49525-2|BAA08471.1|  567|Caenorhabditis elegans TPA-1B protein.       29   1.4  
D49525-1|BAA08470.1|  704|Caenorhabditis elegans TPA-1A protein.       29   1.4  
D14815-1|BAA03556.1|  557|Caenorhabditis elegans TPA-1 protein.        29   1.4  
AF078781-3|AAC26917.1|  567|Caenorhabditis elegans Tpa (tetradec...    29   1.4  
AF078781-2|AAC26916.1|  704|Caenorhabditis elegans Tpa (tetradec...    29   1.4  
AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical ...    28   4.3  
U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fb...    27   5.7  
U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical p...    27   5.7  
U00055-6|AAA50724.1|  494|Caenorhabditis elegans Hypothetical pr...    27   7.6  
L11148-1|AAA28104.1|  237|Caenorhabditis elegans lin-31 protein ...    27   7.6  
AF016669-4|AAB66096.1|  237|Caenorhabditis elegans Abnormal cell...    27   7.6  
AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock tr...    27   10.0 
AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock tr...    27   10.0 
AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical
           protein ZK945.3 protein.
          Length = 766

 Score = 54.0 bits (124), Expect = 6e-08
 Identities = 28/73 (38%), Positives = 42/73 (57%)
 Frame = +1

Query: 25  KINSCKELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITKELLDIIVQMGQSKY 204
           K  +  EL+ ++KG    +   HD SRVI+ L+    E IIN +  EL   IV+M ++ Y
Sbjct: 267 KDTAVHELYGLVKGHAAKLIYAHDTSRVIECLVATEREGIINNLFNELTPEIVRMSKNVY 326

Query: 205 AHHSVKRILKYGT 243
           +   VK++LK GT
Sbjct: 327 SKFFVKKMLKNGT 339


>D49525-2|BAA08471.1|  567|Caenorhabditis elegans TPA-1B protein.
          Length = 567

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 306 HELTGIQYVHKTSSKPHANAICSIFQYSLN 217
           HE+ G Q+V     +PH  ++CS F + LN
Sbjct: 24  HEIRGHQFVATFFRQPHFCSLCSDFMWGLN 53


>D49525-1|BAA08470.1|  704|Caenorhabditis elegans TPA-1A protein.
          Length = 704

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 306 HELTGIQYVHKTSSKPHANAICSIFQYSLN 217
           HE+ G Q+V     +PH  ++CS F + LN
Sbjct: 161 HEIRGHQFVATFFRQPHFCSLCSDFMWGLN 190


>D14815-1|BAA03556.1|  557|Caenorhabditis elegans TPA-1 protein.
          Length = 557

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 306 HELTGIQYVHKTSSKPHANAICSIFQYSLN 217
           HE+ G Q+V     +PH  ++CS F + LN
Sbjct: 14  HEIRGHQFVATFFRQPHFCSLCSDFMWGLN 43


>AF078781-3|AAC26917.1|  567|Caenorhabditis elegans Tpa
           (tetradecanoyl phorbol acetate)resistant protein 1,
           isoform b protein.
          Length = 567

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 306 HELTGIQYVHKTSSKPHANAICSIFQYSLN 217
           HE+ G Q+V     +PH  ++CS F + LN
Sbjct: 24  HEIRGHQFVATFFRQPHFCSLCSDFMWGLN 53


>AF078781-2|AAC26916.1|  704|Caenorhabditis elegans Tpa
           (tetradecanoyl phorbol acetate)resistant protein 1,
           isoform a protein.
          Length = 704

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 306 HELTGIQYVHKTSSKPHANAICSIFQYSLN 217
           HE+ G Q+V     +PH  ++CS F + LN
Sbjct: 161 HEIRGHQFVATFFRQPHFCSLCSDFMWGLN 190


>AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical
           protein C39B5.9 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/47 (23%), Positives = 28/47 (59%)
 Frame = +2

Query: 338 WGVCLEKXKMHMHXNFMERFXRIKRCKVKHSEMHTKQSRNEIRYLRP 478
           +G+C ++  ++++ NF+E    + R  +K+S+    Q+++   +L P
Sbjct: 43  FGICFDEIHIYLYENFIE--LELDRNLIKYSKAPDSQNQSYFNFLWP 87


>U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fbf)
           domain-containingprotein 9 protein.
          Length = 703

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 73  KSIALTHDLSRVIQVLLKH-SPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKYG 240
           K + L    + VIQ +++H SP D    +   + D +++  Q K+A + +++ L +G
Sbjct: 532 KQLVLDQYGNYVIQHVIEHGSPSDKEQIVQDVISDDLLKFAQHKFASNVIEKCLTFG 588


>U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical
           protein C05D11.1 protein.
          Length = 995

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 130 SPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKYGTD 246
           S +D+    TK+L+D  +Q+G S      V   +K G D
Sbjct: 597 SADDVAKHFTKDLIDHSIQVGVSGLYDRFVNLRIKVGAD 635


>U00055-6|AAA50724.1|  494|Caenorhabditis elegans Hypothetical
           protein R02F2.8 protein.
          Length = 494

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 284 YCIPVNSCY*VHLLGLCIWGVCLEKXKMH 370
           + + +N CY + ++GL +W   +    MH
Sbjct: 144 FSLDINQCYLILIVGLAVWPATMLPSPMH 172


>L11148-1|AAA28104.1|  237|Caenorhabditis elegans lin-31 protein
           protein.
          Length = 237

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 489 KWPTGLRYRISFLDCFVCI 433
           +W   LR+ +SF DCF+ I
Sbjct: 56  RWQNSLRHNLSFNDCFIKI 74


>AF016669-4|AAB66096.1|  237|Caenorhabditis elegans Abnormal cell
           lineage protein 31 protein.
          Length = 237

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 489 KWPTGLRYRISFLDCFVCI 433
           +W   LR+ +SF DCF+ I
Sbjct: 56  RWQNSLRHNLSFNDCFIKI 74


>AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 136 EDIINEITKELLDIIVQMGQSKYAHHSVKRILK 234
           ED +N++TKE  D+  QMG  +  H   ++  K
Sbjct: 231 EDKMNKLTKENRDMWTQMGSMRQQHARQQQYFK 263


>AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 136 EDIINEITKELLDIIVQMGQSKYAHHSVKRILK 234
           ED +N++TKE  D+  QMG  +  H   ++  K
Sbjct: 231 EDKMNKLTKENRDMWTQMGSMRQQHARQQQYFK 263


>AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical
           protein Y53C10A.12 protein.
          Length = 671

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 136 EDIINEITKELLDIIVQMGQSKYAHHSVKRILK 234
           ED +N++TKE  D+  QMG  +  H   ++  K
Sbjct: 231 EDKMNKLTKENRDMWTQMGSMRQQHARQQQYFK 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,591,983
Number of Sequences: 27780
Number of extensions: 200671
Number of successful extensions: 566
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)