Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0903.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.1  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   7.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.1  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   7.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 58   LKGQYKSIALTHDLSRVIQVLLKHSP 135
            L+GQ +  +L  D S    ++L+H+P
Sbjct: 1244 LRGQERQRSLFKDSSPATALMLQHAP 1269


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 471 RYRISFLDCFVCISECFT 418
           R R  + DCF+    C T
Sbjct: 40  RLRNQYYDCFIDAGSCLT 57


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 283 ILYPCQLMLLSAPAWIMHM 339
           I++P   ML +A  WI ++
Sbjct: 470 IIFPVSFMLFNAIYWIFYV 488


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 471 RYRISFLDCFVCISECFT 418
           R R  + DCF+    C T
Sbjct: 40  RLRNQYYDCFIDAGSCLT 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,087
Number of Sequences: 438
Number of extensions: 2382
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)