Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0900.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    27   1.3  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    26   3.1  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   5.4  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    24   9.4  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    24   9.4  
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch...    24   9.4  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    24   9.4  
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    24   9.4  

>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 136 QNIK*LHTSILSVIPIYTDISTKQRTHIYLHTTCPYESVNS 258
           +N+K    S L++  I+   + +  TH +L+  CP E + S
Sbjct: 537 KNLKSFLNSCLTIDTIFRATAAELLTHSFLNQACPTEDLKS 577


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 250 PIRRDMLCVSKYVSVVLY*CPCRWGL 173
           P+ +  +C+   +SVV+  CPC  GL
Sbjct: 466 PMGKFAVCLKLTISVVVVACPCALGL 491


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 204 TTDTYLLTHNMSLRIGKFEPNT 269
           TT  ++ +HN+ L++ K+ P T
Sbjct: 253 TTPEFIFSHNLVLQLWKYAPTT 274


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 340 LLKPLIAQSSTIPILLSFVFST 275
           ++ PLI +++TIP   S VFST
Sbjct: 407 VMTPLIKRNTTIPTKKSEVFST 428


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 206 NGHIFTYTQHVPTNR 250
           +  IF+Y +HVP NR
Sbjct: 28  SNRIFSYAEHVPLNR 42


>SPBC1347.09 |||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 284

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNTRTVLK 284
           I Y N      +   +Y    T  ++  +S +I +FE N+ T L+
Sbjct: 4   IVYANVSHYNKIEASKYDNPSTLAISKVISSKILQFEDNSETSLR 48


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 195 QYKTTDTYLLTHNMSLRIGKFEPNTRTVLKTNDNSIGIV 311
           Q  + D+ L ++ MS   G FE NT+T + TNDN   I+
Sbjct: 611 QTTSADSLLNSNGMSGTEG-FE-NTQTSITTNDNQSSIL 647


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 382 LRPRGRSVRAXRILLLKPLIAQSSTIPIL 296
           +RP G S+R   I +LK L    + +P++
Sbjct: 149 IRPTGHSLRPIDIAVLKRLTEVVNVVPVI 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,182
Number of Sequences: 5004
Number of extensions: 35818
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)