BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0900.Seq (449 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_0534 + 30057933-30058290,30058472-30059454 27 7.0 10_06_0010 + 9574265-9574524,9574629-9574956,9576663-9576788,957... 27 9.2 >01_06_0534 + 30057933-30058290,30058472-30059454 Length = 446 Score = 27.1 bits (57), Expect = 7.0 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +2 Query: 53 KTLELLHRMLLYSKALHSRPSTRCQTDNKTL 145 + L+ LHRMLL KA+ +RC T+ L Sbjct: 34 ENLQQLHRMLLRIKAVVEEADSRCITNQAML 64 >10_06_0010 + 9574265-9574524,9574629-9574956,9576663-9576788, 9576948-9577067,9577350-9577562,9577653-9577764, 9578033-9578217,9578310-9578660,9578826-9579383 Length = 750 Score = 26.6 bits (56), Expect = 9.2 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Frame = +3 Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRI-GKFEPNTRTVLKTNDNSIGIVEDCAM 326 + Y++ E++P+LH H YK LT +L F N + N+ + + C + Sbjct: 255 LIYVSREKSPNLH-HHYKAGAMNALTRVSALMTNAPFMLNLDCDMFVNNPRVVLHAMCLL 313 Query: 327 RGFKRRILHARTLRPR 374 GF I A P+ Sbjct: 314 LGFDDEISCAFVQTPQ 329 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,997,991 Number of Sequences: 37544 Number of extensions: 210752 Number of successful extensions: 424 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 421 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 424 length of database: 14,793,348 effective HSP length: 76 effective length of database: 11,940,004 effective search space used: 871620292 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -