Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0900.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0534 + 30057933-30058290,30058472-30059454                       27   7.0  
10_06_0010 + 9574265-9574524,9574629-9574956,9576663-9576788,957...    27   9.2  

>01_06_0534 + 30057933-30058290,30058472-30059454
          Length = 446

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 53  KTLELLHRMLLYSKALHSRPSTRCQTDNKTL 145
           + L+ LHRMLL  KA+     +RC T+   L
Sbjct: 34  ENLQQLHRMLLRIKAVVEEADSRCITNQAML 64


>10_06_0010 +
           9574265-9574524,9574629-9574956,9576663-9576788,
           9576948-9577067,9577350-9577562,9577653-9577764,
           9578033-9578217,9578310-9578660,9578826-9579383
          Length = 750

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +3

Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRI-GKFEPNTRTVLKTNDNSIGIVEDCAM 326
           + Y++ E++P+LH H YK      LT   +L     F  N    +  N+  + +   C +
Sbjct: 255 LIYVSREKSPNLH-HHYKAGAMNALTRVSALMTNAPFMLNLDCDMFVNNPRVVLHAMCLL 313

Query: 327 RGFKRRILHARTLRPR 374
            GF   I  A    P+
Sbjct: 314 LGFDDEISCAFVQTPQ 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,997,991
Number of Sequences: 37544
Number of extensions: 210752
Number of successful extensions: 424
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)