Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0900.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)                 32   0.19 
SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)            32   0.19 
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)                    31   0.33 
SB_26024| Best HMM Match : zf-XS (HMM E-Value=7.5)                     30   1.0  
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_54693| Best HMM Match : fn2 (HMM E-Value=7.7)                       28   4.1  
SB_26557| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_22577| Best HMM Match : fn2 (HMM E-Value=7.7)                       28   4.1  
SB_14740| Best HMM Match : fn2 (HMM E-Value=7.7)                       28   4.1  
SB_4167| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_22454| Best HMM Match : Ribosomal_L35p (HMM E-Value=4.5)            27   5.4  
SB_30297| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_47341| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)              27   7.2  
SB_42490| Best HMM Match : V-set (HMM E-Value=0.00058)                 27   9.5  
SB_42488| Best HMM Match : ig (HMM E-Value=4.2e-06)                    27   9.5  
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              27   9.5  

>SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)
          Length = 685

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +3

Query: 39  THNHTKH*SYYIECYCT---VKLYIHVPAHG-ARPITKH*IITYINSERNPHLHGHQYKT 206
           TH +T+  +   +C  T    ++++H P H  AR  T+    TY +     H+H H+Y  
Sbjct: 242 THANTRTRTKARKCTYTQPGTQMHVHAPGHANARTRTQARKCTYTHPGTQMHVHAHKYAN 301

Query: 207 TDTYLLT 227
             T+  T
Sbjct: 302 AHTHTQT 308


>SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)
          Length = 231

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +3

Query: 39  THNHTKH*SYYIECYCT---VKLYIHVPAHG-ARPITKH*IITYINSERNPHLHGHQYKT 206
           TH +T+  +   +C  T    ++++H P H  AR  T+    TY +     H+H H+Y  
Sbjct: 17  THANTRTRTKARKCTYTQPGTQMHVHAPGHANARTRTQARKCTYTHPGTQMHVHAHKYAN 76

Query: 207 TDTYLLT 227
             T+  T
Sbjct: 77  AHTHTQT 83


>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
          Length = 734

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 2/145 (1%)
 Frame = +3

Query: 3   T*NEKHDLLXSNTHNHTK--H*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERN 176
           T +  H LL + T  HT   H   Y       +  IH  +H   P +     T I +   
Sbjct: 279 THSHPHSLLFTRTIIHTTLIHTHSYSHALLFTRTLIHTHSH---PHSLLFTFTIIRT--- 332

Query: 177 PHLHGHQYKTTDTYLLTHNMSLRIGKFEPNTRTVLKTNDNSIGIVEDCAMRGFKRRILHA 356
            H H H    T T + TH+ S  +  F P  RTV+ T+ +   +        F R I+H 
Sbjct: 333 -HSHSHALSFTHTLIHTHSHSHAL-SFTP--RTVIHTHSHPHAL-------SFTRTIIHT 381

Query: 357 RTLRPRGLNVWHSLIITSAYSSSCS 431
            +     L+   +LI T ++S + S
Sbjct: 382 HSHSHHALSFTCTLIHTHSHSLALS 406


>SB_26024| Best HMM Match : zf-XS (HMM E-Value=7.5)
          Length = 267

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 258 EPNTRTVLKTNDNS-IGIVEDCAMRGFKRRILHARTLRPRGLNVWHSLIITSAY 416
           EP   T+ +T DNS I I +DC      + I  A  L  + +N   SLI T  +
Sbjct: 158 EPERLTIKETRDNSVISIEKDCFTDAEMKVIYDAAVLLRKRINNSESLIFTGRF 211


>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1680

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 129  PITKH*IITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNTRT 275
            P+T+   + Y+N E        + + TDT+ +  N   +IG  +  TRT
Sbjct: 1182 PVTRDATV-YVNGEAVREYESTESQQTDTFSMDWNNEAQIGNHQDGTRT 1229


>SB_54693| Best HMM Match : fn2 (HMM E-Value=7.7)
          Length = 89

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 297 YCHLFLALCVCLARIYRFVGTCCV*VNMCPLFCTDV 190
           + HL + L  CL R+ R  G C   + +C +F   V
Sbjct: 13  FLHLIMRLTRCLLRLRRLHGKCVFSMRVCGVFVIPV 48


>SB_26557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 297 YCHLFLALCVCLARIYRFVGTCCV*VNMCPLFCTDV 190
           + HL + L  CL R+ R  G C   + +C +F   V
Sbjct: 13  FLHLIMRLTRCLLRLRRLHGKCVFSMRVCGVFVIPV 48


>SB_22577| Best HMM Match : fn2 (HMM E-Value=7.7)
          Length = 89

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 297 YCHLFLALCVCLARIYRFVGTCCV*VNMCPLFCTDV 190
           + HL + L  CL R+ R  G C   + +C +F   V
Sbjct: 13  FLHLIMRLTRCLLRLRRLHGKCVFSMRVCGVFVIPV 48


>SB_14740| Best HMM Match : fn2 (HMM E-Value=7.7)
          Length = 89

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 297 YCHLFLALCVCLARIYRFVGTCCV*VNMCPLFCTDV 190
           + HL + L  CL R+ R  G C   + +C +F   V
Sbjct: 13  FLHLIMRLTRCLLRLRRLHGKCVFSMRVCGVFVIPV 48


>SB_4167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 297 YCHLFLALCVCLARIYRFVGTCCV*VNMCPLFCTDV 190
           + HL + L  CL R+ R  G C   + +C +F   V
Sbjct: 13  FLHLIMRLTRCLLRLRRLHGKCVFSMRVCGVFVIPV 48


>SB_22454| Best HMM Match : Ribosomal_L35p (HMM E-Value=4.5)
          Length = 214

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +2

Query: 86  YSKALHSRPSTRCQTDNKTLNNYIHQF*A*SPSTRTSVQNNGHIF--TYTQHVPTNR*IR 259
           Y+  LH  P+T  +  N+ LNN I       P ++ +  N GH F     +H P +  +R
Sbjct: 43  YNYTLHYEPNTTSKRKNRQLNNIIWYN---PPFSKNTSTNIGHRFLSLIDKHFPKDHKLR 99


>SB_30297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 258 EPNTRTVLKTNDNS-IGIVEDCAMRGFKRRILHARTLRPRGLNVWHSLIITSAY 416
           EP   T+ +T DNS I I +DC      + I  A  L  + +N   S I T  +
Sbjct: 63  EPERLTIKETRDNSVISIEKDCFTDAEMKVIYDAAVLLRKRINNSESWIFTGRF 116


>SB_47341| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 297 YCHLFLALCVCLARIYRFVGTCCV*VNMCPLFCTDV 190
           + HL + L  CL R+ R  G C   + +C +F   V
Sbjct: 39  FLHLTMRLTRCLLRLRRLHGKCVFSMRVCGVFVIPV 74


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
 Frame = +3

Query: 36  NTHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYKTTDT 215
           N  + TKH S    C  +  LY        + +    +   I + +N  +   +  ++D 
Sbjct: 109 NHSSETKH-SRESTCDVSPNLYSKPKQDEQKLLNDDNVDILIEAPQNDCVANEKGASSDV 167

Query: 216 YLLTHNMS----LRIGKFEPNTRTVLKTNDNSIGIVED 317
            + +HNM     + I K E     +++T DNS+GI+ D
Sbjct: 168 EV-SHNMGNKLPVEISK-ESRNNVIVQTGDNSLGIIND 203


>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
          Length = 1325

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = +1

Query: 181 IYTDISTKQRTHIYLH----TTCPYESVNS 258
           IYT    +Q  H YLH    TTC Y+S ++
Sbjct: 741 IYTTTRVRQLFHAYLHHDTRTTCKYDSYST 770


>SB_42490| Best HMM Match : V-set (HMM E-Value=0.00058)
          Length = 452

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 192 HQYKTTDTYLLTHNMSLRIGKFEPNTRTVLKTNDNSIGIVEDCAMRGFKRRI 347
           H+ + +DT+        ++ K +P   TVLK     IG  +  A+   K+ I
Sbjct: 70  HRMRPSDTFRQVPEQEGKVNKKKPGKFTVLKVTLEDIGFYQCRALSDSKQEI 121


>SB_42488| Best HMM Match : ig (HMM E-Value=4.2e-06)
          Length = 464

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 192 HQYKTTDTYLLTHNMSLRIGKFEPNTRTVLKTNDNSIGIVEDCAMRGFKRRI 347
           H+ + +DT+        ++ K +P   TVLK     IG  +  A+   K+ I
Sbjct: 68  HRMRPSDTFRQVPEQEGKVNKKKPGKFTVLKVTLEDIGFYQCRALSDSKQEI 119


>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 1102

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 232 LCVSKYVSVVLY*CPCRW 179
           +C  +YV VV+  CPCR+
Sbjct: 887 ICPCRYVHVVMSLCPCRY 904



 Score = 26.6 bits (56), Expect = 9.5
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = -2

Query: 406  VIISECQTLRPRGRSVRAXRILLLKPLIAQSSTIPI-LLSFVFSTVRVFGSNLPIRRDML 230
            V++S C       +S RA  ++ L P       + + L  +V   + +      +    L
Sbjct: 895  VVMSLCPCRYFEDKSARAHVVMTLCPCRYAHVVMSMSLCRYVHVVMSLCSCRYVVMSMSL 954

Query: 229  CVSKYVSVVLY*CPCRW 179
            C  +YV VV+  CPCR+
Sbjct: 955  C--RYVHVVMSLCPCRY 969


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,833,234
Number of Sequences: 59808
Number of extensions: 295804
Number of successful extensions: 834
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)