BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0900.Seq (449 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AB065580-1|BAC05810.1| 346|Homo sapiens seven transmembrane hel... 36 0.084 AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens ... 33 0.45 AK127601-1|BAC87052.1| 415|Homo sapiens protein ( Homo sapiens ... 32 0.79 AK096940-1|BAC04906.1| 226|Homo sapiens protein ( Homo sapiens ... 31 2.4 BC001221-1|AAH01221.1| 535|Homo sapiens nuclear receptor bindin... 30 4.2 AK223136-1|BAD96856.1| 535|Homo sapiens nuclear receptor bindin... 30 4.2 AK027538-1|BAB55185.1| 535|Homo sapiens protein ( Homo sapiens ... 30 4.2 AK001946-1|BAA91993.1| 535|Homo sapiens protein ( Homo sapiens ... 30 4.2 AF113249-1|AAF21967.1| 535|Homo sapiens multiple domain putativ... 30 4.2 AC074117-4|AAY14847.1| 535|Homo sapiens unknown protein. 30 4.2 AK128083-1|BAC87264.1| 225|Homo sapiens protein ( Homo sapiens ... 29 5.5 AK128797-1|BAC87611.1| 201|Homo sapiens protein ( Homo sapiens ... 29 7.3 >AB065580-1|BAC05810.1| 346|Homo sapiens seven transmembrane helix receptor protein. Length = 346 Score = 35.5 bits (78), Expect = 0.084 Identities = 36/120 (30%), Positives = 51/120 (42%) Frame = -1 Query: 362 CACVXNSSFKTSHCAIFYNSNTIVICF*HCACVWLEFTDS*GHVVCK*ICVRCFVLMSV* 183 C CV S S C Y + IC C C+ + V +CV V + V Sbjct: 5 CDCV--SCVSVSVCLYLYVC--VCICVSVCVCICVSVCVCICVCVSVFVCVCICVCVCVC 60 Query: 182 MGITLRIDVCNYLMFCYRSGTVCWDVNVKLYCTITFDVVALMFCMIVSVTXQ*IVFLILS 3 + + + I VC YL C +VC V+V +Y V L C+ VSV+ V+L +S Sbjct: 61 VSMCVSISVCVYLCLCV-CVSVCVYVSVCMYL-----CVFLCVCVYVSVSVCLCVYLHIS 114 Score = 29.1 bits (62), Expect = 7.3 Identities = 23/87 (26%), Positives = 42/87 (48%) Frame = -1 Query: 296 IVICF*HCACVWLEFTDS*GHVVCK*ICVRCFVLMSV*MGITLRIDVCNYLMFCYRSGTV 117 + IC C CV + + S +C +CV V +SV M + + + VC Y+ S + Sbjct: 51 VCICVCVCVCVSMCVSISVCVYLCLCVCVSVCVYVSVCMYLCVFLCVCVYVSV---SVCL 107 Query: 116 CWDVNVKLYCTITFDVVALMFCMIVSV 36 C +++ +Y + V + C+ VS+ Sbjct: 108 CVYLHISVYLCV---YVCICVCVSVSL 131 Score = 28.7 bits (61), Expect = 9.7 Identities = 30/107 (28%), Positives = 44/107 (41%) Frame = -1 Query: 362 CACVXNSSFKTSHCAIFYNSNTIVICF*HCACVWLEFTDS*GHVVCK*ICVRCFVLMSV* 183 C CV S S C Y ++ +C C CV + + +C +C C L Sbjct: 96 CVCVYVS---VSVCLCVYLHISVYLCVYVCICVCVSVS------LCVSVCA-CLSLC--- 142 Query: 182 MGITLRIDVCNYLMFCYRSGTVCWDVNVKLYCTITFDVVALMFCMIV 42 + +R+ VC L C VC V+V + C ++ V L CM V Sbjct: 143 --VCIRVSVCLSLRVCV---CVCLCVSVYV-CVSSYLCVYLCVCMYV 183 >AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens cDNA FLJ41637 fis, clone FEBRA1000030, weakly similar to T-CELL RECEPTOR BETA CHAIN ANA 11. ). Length = 207 Score = 33.1 bits (72), Expect = 0.45 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Frame = +3 Query: 27 LXSNTHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*----IITYINSERNPHLHGH 194 L ++TH HT + I Y + H H + H ++T + H H H Sbjct: 56 LHTHTHTHTLSLYWLISLYIHTHTHTHTHTHAVLYLPTHTHTHAVLTLAYLPIHTHTHTH 115 Query: 195 QYKTTDTYLLTHNMSL 242 + + T L TH +SL Sbjct: 116 THTLSCTSLYTHTLSL 131 >AK127601-1|BAC87052.1| 415|Homo sapiens protein ( Homo sapiens cDNA FLJ45698 fis, clone FEBRA2017811. ). Length = 415 Score = 32.3 bits (70), Expect = 0.79 Identities = 18/64 (28%), Positives = 27/64 (42%) Frame = +3 Query: 39 THNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYKTTDTY 218 TH H H Y + + Y H H + H +IN+ + H+H H + T T+ Sbjct: 253 THIHM-HIHTYTHMHTHMDTYPHTHIHTCTHMHSH---AHINTHTHAHIHMHMHTHTHTH 308 Query: 219 LLTH 230 TH Sbjct: 309 TYTH 312 Score = 31.9 bits (69), Expect = 1.0 Identities = 20/73 (27%), Positives = 31/73 (42%) Frame = +3 Query: 12 EKHDLLXSNTHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHG 191 + H L ++ H HT +I Y ++H P H +H TY +S H+H Sbjct: 338 QMHTLTWTHIHTHT-----HIHIYVYTHTHMHTPTHIYAH--RH-TYTYAHSHTYIHMHT 389 Query: 192 HQYKTTDTYLLTH 230 H + TY+ H Sbjct: 390 HIHTHIHTYIYRH 402 >AK096940-1|BAC04906.1| 226|Homo sapiens protein ( Homo sapiens cDNA FLJ39621 fis, clone SMINT2001158. ). Length = 226 Score = 30.7 bits (66), Expect = 2.4 Identities = 23/90 (25%), Positives = 38/90 (42%) Frame = +3 Query: 18 HDLLXSNTHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQ 197 H ++ H+HT +I + ++ + P H P+T I T ++ + H H H Sbjct: 84 HSFTHAHMHSHT-----HIHSHTHSHIHSNTPTH-THPLTSTHIQT--STVTHTHSHTHA 135 Query: 198 YKTTDTYLLTHNMSLRIGKFEPNTRTVLKT 287 +K T T+ TH L P T + T Sbjct: 136 HKHTYTHTSTHTHPLTFTHTYPITHPLTHT 165 Score = 29.9 bits (64), Expect = 4.2 Identities = 20/76 (26%), Positives = 31/76 (40%) Frame = +3 Query: 15 KHDLLXSNTHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGH 194 KH ++TH H + Y H P H H T+I++ + H H Sbjct: 137 KHTYTHTSTHTHPLT---FTHTYPITHPLTHTPTHTHTHALTH-SHTHIHTHMHSHTHPL 192 Query: 195 QYKTTDTYLLTHNMSL 242 + +T T+ THN+ L Sbjct: 193 THTSTHTHPHTHNVWL 208 >BC001221-1|AAH01221.1| 535|Homo sapiens nuclear receptor binding protein 1 protein. Length = 535 Score = 29.9 bits (64), Expect = 4.2 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = +3 Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNT 269 ++Y++S P +HG+ T DT + HN ++IG P+T Sbjct: 188 LSYLHSCDPPIIHGNL--TCDTIFIQHNGLIKIGSVAPDT 225 >AK223136-1|BAD96856.1| 535|Homo sapiens nuclear receptor binding protein variant protein. Length = 535 Score = 29.9 bits (64), Expect = 4.2 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = +3 Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNT 269 ++Y++S P +HG+ T DT + HN ++IG P+T Sbjct: 188 LSYLHSCDPPIIHGNL--TCDTIFIQHNGLIKIGSVAPDT 225 >AK027538-1|BAB55185.1| 535|Homo sapiens protein ( Homo sapiens cDNA FLJ14632 fis, clone NT2RP2000668, weakly similar to SERINE/THREONINE PROTEIN KINASE PKPA (EC 2.7.1.-). ). Length = 535 Score = 29.9 bits (64), Expect = 4.2 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = +3 Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNT 269 ++Y++S P +HG+ T DT + HN ++IG P+T Sbjct: 188 LSYLHSCDPPIIHGNL--TCDTIFIQHNGLIKIGSVAPDT 225 >AK001946-1|BAA91993.1| 535|Homo sapiens protein ( Homo sapiens cDNA FLJ11084 fis, clone PLACE1005243, weakly similar to SERINE/THREONINE PROTEIN KINASE PKPA (EC 2.7.1.-). ). Length = 535 Score = 29.9 bits (64), Expect = 4.2 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = +3 Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNT 269 ++Y++S P +HG+ T DT + HN ++IG P+T Sbjct: 188 LSYLHSCDPPIIHGNL--TCDTIFIQHNGLIKIGSVAPDT 225 >AF113249-1|AAF21967.1| 535|Homo sapiens multiple domain putative nuclear protein protein. Length = 535 Score = 29.9 bits (64), Expect = 4.2 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = +3 Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNT 269 ++Y++S P +HG+ T DT + HN ++IG P+T Sbjct: 188 LSYLHSCDPPIIHGNL--TCDTIFIQHNGLIKIGSVAPDT 225 >AC074117-4|AAY14847.1| 535|Homo sapiens unknown protein. Length = 535 Score = 29.9 bits (64), Expect = 4.2 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = +3 Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNT 269 ++Y++S P +HG+ T DT + HN ++IG P+T Sbjct: 188 LSYLHSCDPPIIHGNL--TCDTIFIQHNGLIKIGSVAPDT 225 >AK128083-1|BAC87264.1| 225|Homo sapiens protein ( Homo sapiens cDNA FLJ46204 fis, clone TESTI4009501. ). Length = 225 Score = 29.5 bits (63), Expect = 5.5 Identities = 21/65 (32%), Positives = 31/65 (47%) Frame = +3 Query: 36 NTHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYKTTDT 215 +TH HT S+Y T+ H AH +T IT++++ + H+H H T T Sbjct: 135 STHAHTHAHSHYHTRTLTLT---HSHAHSCT-LTS--TITHMHTHTHTHMHTHTSTLTRT 188 Query: 216 YLLTH 230 LTH Sbjct: 189 LTLTH 193 >AK128797-1|BAC87611.1| 201|Homo sapiens protein ( Homo sapiens cDNA FLJ45585 fis, clone BRTHA3013882. ). Length = 201 Score = 29.1 bits (62), Expect = 7.3 Identities = 24/87 (27%), Positives = 37/87 (42%) Frame = -1 Query: 296 IVICF*HCACVWLEFTDS*GHVVCK*ICVRCFVLMSV*MGITLRIDVCNYLMFCYRSGTV 117 + +C C CV L VC +CV + + V + + + + +C + FC S V Sbjct: 73 LCVCVSVCLCVCLHLCVCVCGFVCLCLCVCVCLCVCVCLHLCVCVGLCVSVCFCV-SVCV 131 Query: 116 CWDVNVKLYCTITFDVVALMFCMIVSV 36 C V V C F V + C+ V V Sbjct: 132 CLCVCV---CICVFVCVWVCVCLCVCV 155 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 60,511,177 Number of Sequences: 237096 Number of extensions: 1211435 Number of successful extensions: 2223 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2078 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2209 length of database: 76,859,062 effective HSP length: 84 effective length of database: 56,942,998 effective search space used: 3701294870 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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