Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0900.Seq
(449 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB065580-1|BAC05810.1| 346|Homo sapiens seven transmembrane hel... 36 0.084
AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens ... 33 0.45
AK127601-1|BAC87052.1| 415|Homo sapiens protein ( Homo sapiens ... 32 0.79
AK096940-1|BAC04906.1| 226|Homo sapiens protein ( Homo sapiens ... 31 2.4
BC001221-1|AAH01221.1| 535|Homo sapiens nuclear receptor bindin... 30 4.2
AK223136-1|BAD96856.1| 535|Homo sapiens nuclear receptor bindin... 30 4.2
AK027538-1|BAB55185.1| 535|Homo sapiens protein ( Homo sapiens ... 30 4.2
AK001946-1|BAA91993.1| 535|Homo sapiens protein ( Homo sapiens ... 30 4.2
AF113249-1|AAF21967.1| 535|Homo sapiens multiple domain putativ... 30 4.2
AC074117-4|AAY14847.1| 535|Homo sapiens unknown protein. 30 4.2
AK128083-1|BAC87264.1| 225|Homo sapiens protein ( Homo sapiens ... 29 5.5
AK128797-1|BAC87611.1| 201|Homo sapiens protein ( Homo sapiens ... 29 7.3
>AB065580-1|BAC05810.1| 346|Homo sapiens seven transmembrane helix
receptor protein.
Length = 346
Score = 35.5 bits (78), Expect = 0.084
Identities = 36/120 (30%), Positives = 51/120 (42%)
Frame = -1
Query: 362 CACVXNSSFKTSHCAIFYNSNTIVICF*HCACVWLEFTDS*GHVVCK*ICVRCFVLMSV* 183
C CV S S C Y + IC C C+ + V +CV V + V
Sbjct: 5 CDCV--SCVSVSVCLYLYVC--VCICVSVCVCICVSVCVCICVCVSVFVCVCICVCVCVC 60
Query: 182 MGITLRIDVCNYLMFCYRSGTVCWDVNVKLYCTITFDVVALMFCMIVSVTXQ*IVFLILS 3
+ + + I VC YL C +VC V+V +Y V L C+ VSV+ V+L +S
Sbjct: 61 VSMCVSISVCVYLCLCV-CVSVCVYVSVCMYL-----CVFLCVCVYVSVSVCLCVYLHIS 114
Score = 29.1 bits (62), Expect = 7.3
Identities = 23/87 (26%), Positives = 42/87 (48%)
Frame = -1
Query: 296 IVICF*HCACVWLEFTDS*GHVVCK*ICVRCFVLMSV*MGITLRIDVCNYLMFCYRSGTV 117
+ IC C CV + + S +C +CV V +SV M + + + VC Y+ S +
Sbjct: 51 VCICVCVCVCVSMCVSISVCVYLCLCVCVSVCVYVSVCMYLCVFLCVCVYVSV---SVCL 107
Query: 116 CWDVNVKLYCTITFDVVALMFCMIVSV 36
C +++ +Y + V + C+ VS+
Sbjct: 108 CVYLHISVYLCV---YVCICVCVSVSL 131
Score = 28.7 bits (61), Expect = 9.7
Identities = 30/107 (28%), Positives = 44/107 (41%)
Frame = -1
Query: 362 CACVXNSSFKTSHCAIFYNSNTIVICF*HCACVWLEFTDS*GHVVCK*ICVRCFVLMSV* 183
C CV S S C Y ++ +C C CV + + +C +C C L
Sbjct: 96 CVCVYVS---VSVCLCVYLHISVYLCVYVCICVCVSVS------LCVSVCA-CLSLC--- 142
Query: 182 MGITLRIDVCNYLMFCYRSGTVCWDVNVKLYCTITFDVVALMFCMIV 42
+ +R+ VC L C VC V+V + C ++ V L CM V
Sbjct: 143 --VCIRVSVCLSLRVCV---CVCLCVSVYV-CVSSYLCVYLCVCMYV 183
>AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens
cDNA FLJ41637 fis, clone FEBRA1000030, weakly similar
to T-CELL RECEPTOR BETA CHAIN ANA 11. ).
Length = 207
Score = 33.1 bits (72), Expect = 0.45
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Frame = +3
Query: 27 LXSNTHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*----IITYINSERNPHLHGH 194
L ++TH HT + I Y + H H + H ++T + H H H
Sbjct: 56 LHTHTHTHTLSLYWLISLYIHTHTHTHTHTHAVLYLPTHTHTHAVLTLAYLPIHTHTHTH 115
Query: 195 QYKTTDTYLLTHNMSL 242
+ + T L TH +SL
Sbjct: 116 THTLSCTSLYTHTLSL 131
>AK127601-1|BAC87052.1| 415|Homo sapiens protein ( Homo sapiens
cDNA FLJ45698 fis, clone FEBRA2017811. ).
Length = 415
Score = 32.3 bits (70), Expect = 0.79
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = +3
Query: 39 THNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYKTTDTY 218
TH H H Y + + Y H H + H +IN+ + H+H H + T T+
Sbjct: 253 THIHM-HIHTYTHMHTHMDTYPHTHIHTCTHMHSH---AHINTHTHAHIHMHMHTHTHTH 308
Query: 219 LLTH 230
TH
Sbjct: 309 TYTH 312
Score = 31.9 bits (69), Expect = 1.0
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = +3
Query: 12 EKHDLLXSNTHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHG 191
+ H L ++ H HT +I Y ++H P H +H TY +S H+H
Sbjct: 338 QMHTLTWTHIHTHT-----HIHIYVYTHTHMHTPTHIYAH--RH-TYTYAHSHTYIHMHT 389
Query: 192 HQYKTTDTYLLTH 230
H + TY+ H
Sbjct: 390 HIHTHIHTYIYRH 402
>AK096940-1|BAC04906.1| 226|Homo sapiens protein ( Homo sapiens
cDNA FLJ39621 fis, clone SMINT2001158. ).
Length = 226
Score = 30.7 bits (66), Expect = 2.4
Identities = 23/90 (25%), Positives = 38/90 (42%)
Frame = +3
Query: 18 HDLLXSNTHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQ 197
H ++ H+HT +I + ++ + P H P+T I T ++ + H H H
Sbjct: 84 HSFTHAHMHSHT-----HIHSHTHSHIHSNTPTH-THPLTSTHIQT--STVTHTHSHTHA 135
Query: 198 YKTTDTYLLTHNMSLRIGKFEPNTRTVLKT 287
+K T T+ TH L P T + T
Sbjct: 136 HKHTYTHTSTHTHPLTFTHTYPITHPLTHT 165
Score = 29.9 bits (64), Expect = 4.2
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = +3
Query: 15 KHDLLXSNTHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGH 194
KH ++TH H + Y H P H H T+I++ + H H
Sbjct: 137 KHTYTHTSTHTHPLT---FTHTYPITHPLTHTPTHTHTHALTH-SHTHIHTHMHSHTHPL 192
Query: 195 QYKTTDTYLLTHNMSL 242
+ +T T+ THN+ L
Sbjct: 193 THTSTHTHPHTHNVWL 208
>BC001221-1|AAH01221.1| 535|Homo sapiens nuclear receptor binding
protein 1 protein.
Length = 535
Score = 29.9 bits (64), Expect = 4.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNT 269
++Y++S P +HG+ T DT + HN ++IG P+T
Sbjct: 188 LSYLHSCDPPIIHGNL--TCDTIFIQHNGLIKIGSVAPDT 225
>AK223136-1|BAD96856.1| 535|Homo sapiens nuclear receptor binding
protein variant protein.
Length = 535
Score = 29.9 bits (64), Expect = 4.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNT 269
++Y++S P +HG+ T DT + HN ++IG P+T
Sbjct: 188 LSYLHSCDPPIIHGNL--TCDTIFIQHNGLIKIGSVAPDT 225
>AK027538-1|BAB55185.1| 535|Homo sapiens protein ( Homo sapiens
cDNA FLJ14632 fis, clone NT2RP2000668, weakly similar to
SERINE/THREONINE PROTEIN KINASE PKPA (EC 2.7.1.-). ).
Length = 535
Score = 29.9 bits (64), Expect = 4.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNT 269
++Y++S P +HG+ T DT + HN ++IG P+T
Sbjct: 188 LSYLHSCDPPIIHGNL--TCDTIFIQHNGLIKIGSVAPDT 225
>AK001946-1|BAA91993.1| 535|Homo sapiens protein ( Homo sapiens
cDNA FLJ11084 fis, clone PLACE1005243, weakly similar to
SERINE/THREONINE PROTEIN KINASE PKPA (EC 2.7.1.-). ).
Length = 535
Score = 29.9 bits (64), Expect = 4.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNT 269
++Y++S P +HG+ T DT + HN ++IG P+T
Sbjct: 188 LSYLHSCDPPIIHGNL--TCDTIFIQHNGLIKIGSVAPDT 225
>AF113249-1|AAF21967.1| 535|Homo sapiens multiple domain putative
nuclear protein protein.
Length = 535
Score = 29.9 bits (64), Expect = 4.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNT 269
++Y++S P +HG+ T DT + HN ++IG P+T
Sbjct: 188 LSYLHSCDPPIIHGNL--TCDTIFIQHNGLIKIGSVAPDT 225
>AC074117-4|AAY14847.1| 535|Homo sapiens unknown protein.
Length = 535
Score = 29.9 bits (64), Expect = 4.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNT 269
++Y++S P +HG+ T DT + HN ++IG P+T
Sbjct: 188 LSYLHSCDPPIIHGNL--TCDTIFIQHNGLIKIGSVAPDT 225
>AK128083-1|BAC87264.1| 225|Homo sapiens protein ( Homo sapiens
cDNA FLJ46204 fis, clone TESTI4009501. ).
Length = 225
Score = 29.5 bits (63), Expect = 5.5
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +3
Query: 36 NTHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYKTTDT 215
+TH HT S+Y T+ H AH +T IT++++ + H+H H T T
Sbjct: 135 STHAHTHAHSHYHTRTLTLT---HSHAHSCT-LTS--TITHMHTHTHTHMHTHTSTLTRT 188
Query: 216 YLLTH 230
LTH
Sbjct: 189 LTLTH 193
>AK128797-1|BAC87611.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ45585 fis, clone BRTHA3013882. ).
Length = 201
Score = 29.1 bits (62), Expect = 7.3
Identities = 24/87 (27%), Positives = 37/87 (42%)
Frame = -1
Query: 296 IVICF*HCACVWLEFTDS*GHVVCK*ICVRCFVLMSV*MGITLRIDVCNYLMFCYRSGTV 117
+ +C C CV L VC +CV + + V + + + + +C + FC S V
Sbjct: 73 LCVCVSVCLCVCLHLCVCVCGFVCLCLCVCVCLCVCVCLHLCVCVGLCVSVCFCV-SVCV 131
Query: 116 CWDVNVKLYCTITFDVVALMFCMIVSV 36
C V V C F V + C+ V V
Sbjct: 132 CLCVCV---CICVFVCVWVCVCLCVCV 155
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,511,177
Number of Sequences: 237096
Number of extensions: 1211435
Number of successful extensions: 2223
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2209
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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