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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0900.Seq
         (449 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane hel...    36   0.084
AK123631-1|BAC85667.1|  207|Homo sapiens protein ( Homo sapiens ...    33   0.45 
AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens ...    32   0.79 
AK096940-1|BAC04906.1|  226|Homo sapiens protein ( Homo sapiens ...    31   2.4  
BC001221-1|AAH01221.1|  535|Homo sapiens nuclear receptor bindin...    30   4.2  
AK223136-1|BAD96856.1|  535|Homo sapiens nuclear receptor bindin...    30   4.2  
AK027538-1|BAB55185.1|  535|Homo sapiens protein ( Homo sapiens ...    30   4.2  
AK001946-1|BAA91993.1|  535|Homo sapiens protein ( Homo sapiens ...    30   4.2  
AF113249-1|AAF21967.1|  535|Homo sapiens multiple domain putativ...    30   4.2  
AC074117-4|AAY14847.1|  535|Homo sapiens unknown protein.              30   4.2  
AK128083-1|BAC87264.1|  225|Homo sapiens protein ( Homo sapiens ...    29   5.5  
AK128797-1|BAC87611.1|  201|Homo sapiens protein ( Homo sapiens ...    29   7.3  

>AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 346

 Score = 35.5 bits (78), Expect = 0.084
 Identities = 36/120 (30%), Positives = 51/120 (42%)
 Frame = -1

Query: 362 CACVXNSSFKTSHCAIFYNSNTIVICF*HCACVWLEFTDS*GHVVCK*ICVRCFVLMSV* 183
           C CV  S    S C   Y    + IC   C C+ +         V   +CV   V + V 
Sbjct: 5   CDCV--SCVSVSVCLYLYVC--VCICVSVCVCICVSVCVCICVCVSVFVCVCICVCVCVC 60

Query: 182 MGITLRIDVCNYLMFCYRSGTVCWDVNVKLYCTITFDVVALMFCMIVSVTXQ*IVFLILS 3
           + + + I VC YL  C    +VC  V+V +Y       V L  C+ VSV+    V+L +S
Sbjct: 61  VSMCVSISVCVYLCLCV-CVSVCVYVSVCMYL-----CVFLCVCVYVSVSVCLCVYLHIS 114



 Score = 29.1 bits (62), Expect = 7.3
 Identities = 23/87 (26%), Positives = 42/87 (48%)
 Frame = -1

Query: 296 IVICF*HCACVWLEFTDS*GHVVCK*ICVRCFVLMSV*MGITLRIDVCNYLMFCYRSGTV 117
           + IC   C CV +  + S    +C  +CV   V +SV M + + + VC Y+     S  +
Sbjct: 51  VCICVCVCVCVSMCVSISVCVYLCLCVCVSVCVYVSVCMYLCVFLCVCVYVSV---SVCL 107

Query: 116 CWDVNVKLYCTITFDVVALMFCMIVSV 36
           C  +++ +Y  +    V +  C+ VS+
Sbjct: 108 CVYLHISVYLCV---YVCICVCVSVSL 131



 Score = 28.7 bits (61), Expect = 9.7
 Identities = 30/107 (28%), Positives = 44/107 (41%)
 Frame = -1

Query: 362 CACVXNSSFKTSHCAIFYNSNTIVICF*HCACVWLEFTDS*GHVVCK*ICVRCFVLMSV* 183
           C CV  S    S C   Y   ++ +C   C CV +  +      +C  +C  C  L    
Sbjct: 96  CVCVYVS---VSVCLCVYLHISVYLCVYVCICVCVSVS------LCVSVCA-CLSLC--- 142

Query: 182 MGITLRIDVCNYLMFCYRSGTVCWDVNVKLYCTITFDVVALMFCMIV 42
             + +R+ VC  L  C     VC  V+V + C  ++  V L  CM V
Sbjct: 143 --VCIRVSVCLSLRVCV---CVCLCVSVYV-CVSSYLCVYLCVCMYV 183


>AK123631-1|BAC85667.1|  207|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41637 fis, clone FEBRA1000030, weakly  similar
           to T-CELL RECEPTOR BETA CHAIN ANA 11. ).
          Length = 207

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
 Frame = +3

Query: 27  LXSNTHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*----IITYINSERNPHLHGH 194
           L ++TH HT    + I  Y     + H   H    +  H     ++T      + H H H
Sbjct: 56  LHTHTHTHTLSLYWLISLYIHTHTHTHTHTHAVLYLPTHTHTHAVLTLAYLPIHTHTHTH 115

Query: 195 QYKTTDTYLLTHNMSL 242
            +  + T L TH +SL
Sbjct: 116 THTLSCTSLYTHTLSL 131


>AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45698 fis, clone FEBRA2017811. ).
          Length = 415

 Score = 32.3 bits (70), Expect = 0.79
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = +3

Query: 39  THNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYKTTDTY 218
           TH H  H   Y   +  +  Y H   H    +  H    +IN+  + H+H H +  T T+
Sbjct: 253 THIHM-HIHTYTHMHTHMDTYPHTHIHTCTHMHSH---AHINTHTHAHIHMHMHTHTHTH 308

Query: 219 LLTH 230
             TH
Sbjct: 309 TYTH 312



 Score = 31.9 bits (69), Expect = 1.0
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +3

Query: 12  EKHDLLXSNTHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHG 191
           + H L  ++ H HT     +I  Y     ++H P H      +H   TY +S    H+H 
Sbjct: 338 QMHTLTWTHIHTHT-----HIHIYVYTHTHMHTPTHIYAH--RH-TYTYAHSHTYIHMHT 389

Query: 192 HQYKTTDTYLLTH 230
           H +    TY+  H
Sbjct: 390 HIHTHIHTYIYRH 402


>AK096940-1|BAC04906.1|  226|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39621 fis, clone SMINT2001158. ).
          Length = 226

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 23/90 (25%), Positives = 38/90 (42%)
 Frame = +3

Query: 18  HDLLXSNTHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQ 197
           H    ++ H+HT     +I  +    ++ + P H   P+T   I T  ++  + H H H 
Sbjct: 84  HSFTHAHMHSHT-----HIHSHTHSHIHSNTPTH-THPLTSTHIQT--STVTHTHSHTHA 135

Query: 198 YKTTDTYLLTHNMSLRIGKFEPNTRTVLKT 287
           +K T T+  TH   L      P T  +  T
Sbjct: 136 HKHTYTHTSTHTHPLTFTHTYPITHPLTHT 165



 Score = 29.9 bits (64), Expect = 4.2
 Identities = 20/76 (26%), Positives = 31/76 (40%)
 Frame = +3

Query: 15  KHDLLXSNTHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGH 194
           KH    ++TH H      +   Y       H P H       H   T+I++  + H H  
Sbjct: 137 KHTYTHTSTHTHPLT---FTHTYPITHPLTHTPTHTHTHALTH-SHTHIHTHMHSHTHPL 192

Query: 195 QYKTTDTYLLTHNMSL 242
            + +T T+  THN+ L
Sbjct: 193 THTSTHTHPHTHNVWL 208


>BC001221-1|AAH01221.1|  535|Homo sapiens nuclear receptor binding
           protein 1 protein.
          Length = 535

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNT 269
           ++Y++S   P +HG+   T DT  + HN  ++IG   P+T
Sbjct: 188 LSYLHSCDPPIIHGNL--TCDTIFIQHNGLIKIGSVAPDT 225


>AK223136-1|BAD96856.1|  535|Homo sapiens nuclear receptor binding
           protein variant protein.
          Length = 535

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNT 269
           ++Y++S   P +HG+   T DT  + HN  ++IG   P+T
Sbjct: 188 LSYLHSCDPPIIHGNL--TCDTIFIQHNGLIKIGSVAPDT 225


>AK027538-1|BAB55185.1|  535|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14632 fis, clone NT2RP2000668, weakly similar to
           SERINE/THREONINE PROTEIN KINASE PKPA (EC 2.7.1.-). ).
          Length = 535

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNT 269
           ++Y++S   P +HG+   T DT  + HN  ++IG   P+T
Sbjct: 188 LSYLHSCDPPIIHGNL--TCDTIFIQHNGLIKIGSVAPDT 225


>AK001946-1|BAA91993.1|  535|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11084 fis, clone PLACE1005243, weakly similar to
           SERINE/THREONINE PROTEIN KINASE PKPA (EC 2.7.1.-). ).
          Length = 535

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNT 269
           ++Y++S   P +HG+   T DT  + HN  ++IG   P+T
Sbjct: 188 LSYLHSCDPPIIHGNL--TCDTIFIQHNGLIKIGSVAPDT 225


>AF113249-1|AAF21967.1|  535|Homo sapiens multiple domain putative
           nuclear protein protein.
          Length = 535

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNT 269
           ++Y++S   P +HG+   T DT  + HN  ++IG   P+T
Sbjct: 188 LSYLHSCDPPIIHGNL--TCDTIFIQHNGLIKIGSVAPDT 225


>AC074117-4|AAY14847.1|  535|Homo sapiens unknown protein.
          Length = 535

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 150 ITYINSERNPHLHGHQYKTTDTYLLTHNMSLRIGKFEPNT 269
           ++Y++S   P +HG+   T DT  + HN  ++IG   P+T
Sbjct: 188 LSYLHSCDPPIIHGNL--TCDTIFIQHNGLIKIGSVAPDT 225


>AK128083-1|BAC87264.1|  225|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46204 fis, clone TESTI4009501. ).
          Length = 225

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +3

Query: 36  NTHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYKTTDT 215
           +TH HT   S+Y     T+    H  AH    +T    IT++++  + H+H H    T T
Sbjct: 135 STHAHTHAHSHYHTRTLTLT---HSHAHSCT-LTS--TITHMHTHTHTHMHTHTSTLTRT 188

Query: 216 YLLTH 230
             LTH
Sbjct: 189 LTLTH 193


>AK128797-1|BAC87611.1|  201|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45585 fis, clone BRTHA3013882. ).
          Length = 201

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 24/87 (27%), Positives = 37/87 (42%)
 Frame = -1

Query: 296 IVICF*HCACVWLEFTDS*GHVVCK*ICVRCFVLMSV*MGITLRIDVCNYLMFCYRSGTV 117
           + +C   C CV L         VC  +CV   + + V + + + + +C  + FC  S  V
Sbjct: 73  LCVCVSVCLCVCLHLCVCVCGFVCLCLCVCVCLCVCVCLHLCVCVGLCVSVCFCV-SVCV 131

Query: 116 CWDVNVKLYCTITFDVVALMFCMIVSV 36
           C  V V   C   F  V +  C+ V V
Sbjct: 132 CLCVCV---CICVFVCVWVCVCLCVCV 155


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,511,177
Number of Sequences: 237096
Number of extensions: 1211435
Number of successful extensions: 2223
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2209
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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