BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0900.Seq (449 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical pr... 30 0.89 AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical ... 30 0.89 U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass... 28 3.6 U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 28 3.6 Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical p... 27 6.3 >Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical protein F36H2.1b protein. Length = 1035 Score = 29.9 bits (64), Expect = 0.89 Identities = 14/59 (23%), Positives = 30/59 (50%) Frame = +3 Query: 273 TVLKTNDNSIGIVEDCAMRGFKRRILHARTLRPRGLNVWHSLIITSAYSSSCSHRRXVY 449 +V T+ ++ + C +RR+LH+RT+R V H +T ++ C+ + ++ Sbjct: 19 SVSSTSSSTFSMTRCCRSLFSRRRVLHSRTVRVGYGPVGHDANVTFTPNTVCNQKYNIF 77 >AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical protein F36H2.1b protein. Length = 1035 Score = 29.9 bits (64), Expect = 0.89 Identities = 14/59 (23%), Positives = 30/59 (50%) Frame = +3 Query: 273 TVLKTNDNSIGIVEDCAMRGFKRRILHARTLRPRGLNVWHSLIITSAYSSSCSHRRXVY 449 +V T+ ++ + C +RR+LH+RT+R V H +T ++ C+ + ++ Sbjct: 19 SVSSTSSSTFSMTRCCRSLFSRRRVLHSRTVRVGYGPVGHDANVTFTPNTVCNQKYNIF 77 >U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned gene nameprotein 308, isoform e protein. Length = 2702 Score = 27.9 bits (59), Expect = 3.6 Identities = 15/60 (25%), Positives = 28/60 (46%) Frame = +3 Query: 258 EPNTRTVLKTNDNSIGIVEDCAMRGFKRRILHARTLRPRGLNVWHSLIITSAYSSSCSHR 437 EP + T ++T+ S + +D + G K I +G+NV +I + Y + S + Sbjct: 1352 EPTSFTTIQTSSVSASVSQDMSRLGEKEAIKKVLQNSNKGINVEKKMIEATEYRETISEQ 1411 >U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned gene nameprotein 308, isoform c protein. Length = 7548 Score = 27.9 bits (59), Expect = 3.6 Identities = 15/60 (25%), Positives = 28/60 (46%) Frame = +3 Query: 258 EPNTRTVLKTNDNSIGIVEDCAMRGFKRRILHARTLRPRGLNVWHSLIITSAYSSSCSHR 437 EP + T ++T+ S + +D + G K I +G+NV +I + Y + S + Sbjct: 6198 EPTSFTTIQTSSVSASVSQDMSRLGEKEAIKKVLQNSNKGINVEKKMIEATEYRETISEQ 6257 >Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical protein Y41E3.9 protein. Length = 1440 Score = 27.1 bits (57), Expect = 6.3 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +1 Query: 151 LHTSILSVIP-IYTDISTKQRTHIYLHTTC 237 + +++ +P I+TDIS +Q T + LH C Sbjct: 235 VRNDLIAALPEIFTDISLQQSTAVRLHKEC 264 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,077,032 Number of Sequences: 27780 Number of extensions: 211899 Number of successful extensions: 608 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 586 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 608 length of database: 12,740,198 effective HSP length: 75 effective length of database: 10,656,698 effective search space used: 788595652 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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