Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0900.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical pr...    30   0.89 
AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical ...    30   0.89 
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass...    28   3.6  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    28   3.6  
Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical p...    27   6.3  

>Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical
           protein F36H2.1b protein.
          Length = 1035

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +3

Query: 273 TVLKTNDNSIGIVEDCAMRGFKRRILHARTLRPRGLNVWHSLIITSAYSSSCSHRRXVY 449
           +V  T+ ++  +   C     +RR+LH+RT+R     V H   +T   ++ C+ +  ++
Sbjct: 19  SVSSTSSSTFSMTRCCRSLFSRRRVLHSRTVRVGYGPVGHDANVTFTPNTVCNQKYNIF 77


>AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical
           protein F36H2.1b protein.
          Length = 1035

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +3

Query: 273 TVLKTNDNSIGIVEDCAMRGFKRRILHARTLRPRGLNVWHSLIITSAYSSSCSHRRXVY 449
           +V  T+ ++  +   C     +RR+LH+RT+R     V H   +T   ++ C+ +  ++
Sbjct: 19  SVSSTSSSTFSMTRCCRSLFSRRRVLHSRTVRVGYGPVGHDANVTFTPNTVCNQKYNIF 77


>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform e protein.
          Length = 2702

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 258  EPNTRTVLKTNDNSIGIVEDCAMRGFKRRILHARTLRPRGLNVWHSLIITSAYSSSCSHR 437
            EP + T ++T+  S  + +D +  G K  I        +G+NV   +I  + Y  + S +
Sbjct: 1352 EPTSFTTIQTSSVSASVSQDMSRLGEKEAIKKVLQNSNKGINVEKKMIEATEYRETISEQ 1411


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 258  EPNTRTVLKTNDNSIGIVEDCAMRGFKRRILHARTLRPRGLNVWHSLIITSAYSSSCSHR 437
            EP + T ++T+  S  + +D +  G K  I        +G+NV   +I  + Y  + S +
Sbjct: 6198 EPTSFTTIQTSSVSASVSQDMSRLGEKEAIKKVLQNSNKGINVEKKMIEATEYRETISEQ 6257


>Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical
           protein Y41E3.9 protein.
          Length = 1440

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 151 LHTSILSVIP-IYTDISTKQRTHIYLHTTC 237
           +   +++ +P I+TDIS +Q T + LH  C
Sbjct: 235 VRNDLIAALPEIFTDISLQQSTAVRLHKEC 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,077,032
Number of Sequences: 27780
Number of extensions: 211899
Number of successful extensions: 608
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)