Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0900.Seq
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    27   0.12 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.29 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   2.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   2.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   4.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   4.7  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 207 TDTYLLTHNMSLRIGKFEPNTRTVLKTNDNSIGIVE 314
           TD+Y L   ++   G+F  NT  V+ T   SI + +
Sbjct: 130 TDSYKLIGRIAAGEGRFNTNTEVVINTEVKSIPVTK 165


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -1

Query: 152 NYLMFCYRSGTVCWDVNVKL----YCTITFDVVALMFCMIVSVTXQ*IVFLILS 3
           +Y     R+G  CWD N +L    +  +  +   ++FC  +S+        +LS
Sbjct: 311 DYFTQINRNGIACWDTNTELNPNTFILVAENNTTMVFCNDLSIDRSTNTMYVLS 364


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = +3

Query: 357 RTLRPRGLNVWHSLIITSAYSSSCSHRRXVY 449
           R  +P  +  WH ++  +   +SC   R  Y
Sbjct: 76  RFRKPLPIEPWHGVLNATVLPNSCYQERYEY 106


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = +3

Query: 357 RTLRPRGLNVWHSLIITSAYSSSCSHRRXVY 449
           R  +P  +  WH ++  +   +SC   R  Y
Sbjct: 76  RFRKPLPIEPWHGVLNATVLPNSCYQERYEY 106


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 163 ILSVIPIYTDISTKQRTHIYLHTTCPYESVNS 258
           + + + +   I +   T++ L T CPY S  S
Sbjct: 611 MFNCVVVEETIPSLNSTNVTLSTKCPYPSYYS 642


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 298 LLSFVFSTVRVFGSNLPI 245
           +L F+FS   VFG+ L I
Sbjct: 50  ILLFLFSVATVFGNTLVI 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,476
Number of Sequences: 438
Number of extensions: 2443
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)