BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0900.Seq (449 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g06750.1 68414.m00717 hypothetical protein 29 1.1 At1g48030.2 68414.m05351 dihydrolipoamide dehydrogenase 1, mitoc... 29 1.5 At1g48030.1 68414.m05350 dihydrolipoamide dehydrogenase 1, mitoc... 29 1.5 At5g17870.1 68418.m02095 plastid-specific ribosomal protein-rela... 28 3.4 At5g54990.1 68418.m06848 zinc finger (C3HC4-type RING finger) fa... 27 4.4 At2g13100.1 68415.m01436 glycerol-3-phosphate transporter, putat... 27 4.4 At3g07400.1 68416.m00882 lipase class 3 family protein contains ... 27 7.7 >At1g06750.1 68414.m00717 hypothetical protein Length = 495 Score = 29.5 bits (63), Expect = 1.1 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 10/105 (9%) Frame = +3 Query: 147 IITYINSERNPHLH----GHQYKTTDTYLLTHNMSLRIG---KFEPNTRTVLKTNDNSIG 305 ++ I RN H H G YK D ++T N RIG + + + R +G Sbjct: 286 VVQTITMARNVHRHHYRMGAGYKVGDDGVITENYWERIGERQQIQEDGRRRKPYRIELVG 345 Query: 306 IVED---CAMRGFKRRILHARTLRPRGLNVWHSLIITSAYSSSCS 431 +V D +RG +R I+ R +R R H A+ + CS Sbjct: 346 VVCDAYLAVIRGIRRAIMCRRAVRVRSQLRSHKR-FAEAFPTYCS 389 >At1g48030.2 68414.m05351 dihydrolipoamide dehydrogenase 1, mitochondrial / lipoamide dehydrogenase 1 (MTLPD1) identical to GB:AAF34795 [gi:12704696] from [Arabidopsis thaliana] Length = 507 Score = 29.1 bits (62), Expect = 1.5 Identities = 19/73 (26%), Positives = 33/73 (45%) Frame = +3 Query: 207 TDTYLLTHNMSLRIGKFEPNTRTVLKTNDNSIGIVEDCAMRGFKRRILHARTLRPRGLNV 386 T+ L +S R+GKF + K DN+ G+V+ A + +IL + P + Sbjct: 404 TEEQLKKEGVSYRVGKFPFMANSRAKAIDNAEGLVKILADKE-TDKILGVHIMAPNAGEL 462 Query: 387 WHSLIITSAYSSS 425 H ++ Y +S Sbjct: 463 IHEAVLAINYDAS 475 >At1g48030.1 68414.m05350 dihydrolipoamide dehydrogenase 1, mitochondrial / lipoamide dehydrogenase 1 (MTLPD1) identical to GB:AAF34795 [gi:12704696] from [Arabidopsis thaliana] Length = 507 Score = 29.1 bits (62), Expect = 1.5 Identities = 19/73 (26%), Positives = 33/73 (45%) Frame = +3 Query: 207 TDTYLLTHNMSLRIGKFEPNTRTVLKTNDNSIGIVEDCAMRGFKRRILHARTLRPRGLNV 386 T+ L +S R+GKF + K DN+ G+V+ A + +IL + P + Sbjct: 404 TEEQLKKEGVSYRVGKFPFMANSRAKAIDNAEGLVKILADKE-TDKILGVHIMAPNAGEL 462 Query: 387 WHSLIITSAYSSS 425 H ++ Y +S Sbjct: 463 IHEAVLAINYDAS 475 >At5g17870.1 68418.m02095 plastid-specific ribosomal protein-related contains similarity to plastid-specific ribosomal protein 6 precursor GI:7578927 from [Spinacia oleracea] Length = 106 Score = 27.9 bits (59), Expect = 3.4 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = +3 Query: 288 NDNSIGIVEDCAMRGFKRRILHARTLRPRGLNVW 389 N +G+V +C+ R K+ H R RP+ W Sbjct: 30 NGGGLGMVIECSSRPQKKSTAHHRKTRPKKTQPW 63 >At5g54990.1 68418.m06848 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type Length = 226 Score = 27.5 bits (58), Expect = 4.4 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Frame = +3 Query: 15 KHDLLXSNTHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPH--LH 188 KH+L+ ++T+ + + T K IH+ A + I+TY + R H L Sbjct: 6 KHELISTSTNETDRVINRCFLRKKTTKEVIHLKASQVESDSYSFIVTYQPNLRIRHENLD 65 Query: 189 GHQYKTT 209 GHQ KTT Sbjct: 66 GHQLKTT 72 >At2g13100.1 68415.m01436 glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative similar to glycerol-3-phosphate transporter (glycerol 3-phosphate permease) [Homo sapiens] GI:7543982; contains Pfam profile PF00083: major facilitator superfamily protein Length = 493 Score = 27.5 bits (58), Expect = 4.4 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -3 Query: 285 FLALCVCLARIYRFVGTCCV*VNMCPLFCTDVRVDGDYA 169 FLAL + +YR G+ + +N+ +F + + V+G YA Sbjct: 362 FLALSIPALIMYRVYGSVSMFINIVLMFISGLLVNGPYA 400 >At3g07400.1 68416.m00882 lipase class 3 family protein contains Pfam profile PF01764: Lipase Length = 1003 Score = 26.6 bits (56), Expect = 7.7 Identities = 12/39 (30%), Positives = 24/39 (61%) Frame = +3 Query: 201 KTTDTYLLTHNMSLRIGKFEPNTRTVLKTNDNSIGIVED 317 K D +L HN+S RI +++ N+ T+L+ ++ ++ D Sbjct: 787 KKIDLIILVHNLSHRIPRYQ-NSTTLLQQQQPALALLLD 824 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,092,497 Number of Sequences: 28952 Number of extensions: 178533 Number of successful extensions: 364 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 360 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 364 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 732537840 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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