Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0900.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06750.1 68414.m00717 hypothetical protein                          29   1.1  
At1g48030.2 68414.m05351 dihydrolipoamide dehydrogenase 1, mitoc...    29   1.5  
At1g48030.1 68414.m05350 dihydrolipoamide dehydrogenase 1, mitoc...    29   1.5  
At5g17870.1 68418.m02095 plastid-specific ribosomal protein-rela...    28   3.4  
At5g54990.1 68418.m06848 zinc finger (C3HC4-type RING finger) fa...    27   4.4  
At2g13100.1 68415.m01436 glycerol-3-phosphate transporter, putat...    27   4.4  
At3g07400.1 68416.m00882 lipase class 3 family protein contains ...    27   7.7  

>At1g06750.1 68414.m00717 hypothetical protein
          Length = 495

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
 Frame = +3

Query: 147 IITYINSERNPHLH----GHQYKTTDTYLLTHNMSLRIG---KFEPNTRTVLKTNDNSIG 305
           ++  I   RN H H    G  YK  D  ++T N   RIG   + + + R         +G
Sbjct: 286 VVQTITMARNVHRHHYRMGAGYKVGDDGVITENYWERIGERQQIQEDGRRRKPYRIELVG 345

Query: 306 IVED---CAMRGFKRRILHARTLRPRGLNVWHSLIITSAYSSSCS 431
           +V D     +RG +R I+  R +R R     H      A+ + CS
Sbjct: 346 VVCDAYLAVIRGIRRAIMCRRAVRVRSQLRSHKR-FAEAFPTYCS 389


>At1g48030.2 68414.m05351 dihydrolipoamide dehydrogenase 1,
           mitochondrial / lipoamide dehydrogenase 1 (MTLPD1)
           identical to GB:AAF34795 [gi:12704696] from [Arabidopsis
           thaliana]
          Length = 507

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +3

Query: 207 TDTYLLTHNMSLRIGKFEPNTRTVLKTNDNSIGIVEDCAMRGFKRRILHARTLRPRGLNV 386
           T+  L    +S R+GKF     +  K  DN+ G+V+  A +    +IL    + P    +
Sbjct: 404 TEEQLKKEGVSYRVGKFPFMANSRAKAIDNAEGLVKILADKE-TDKILGVHIMAPNAGEL 462

Query: 387 WHSLIITSAYSSS 425
            H  ++   Y +S
Sbjct: 463 IHEAVLAINYDAS 475


>At1g48030.1 68414.m05350 dihydrolipoamide dehydrogenase 1,
           mitochondrial / lipoamide dehydrogenase 1 (MTLPD1)
           identical to GB:AAF34795 [gi:12704696] from [Arabidopsis
           thaliana]
          Length = 507

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +3

Query: 207 TDTYLLTHNMSLRIGKFEPNTRTVLKTNDNSIGIVEDCAMRGFKRRILHARTLRPRGLNV 386
           T+  L    +S R+GKF     +  K  DN+ G+V+  A +    +IL    + P    +
Sbjct: 404 TEEQLKKEGVSYRVGKFPFMANSRAKAIDNAEGLVKILADKE-TDKILGVHIMAPNAGEL 462

Query: 387 WHSLIITSAYSSS 425
            H  ++   Y +S
Sbjct: 463 IHEAVLAINYDAS 475


>At5g17870.1 68418.m02095 plastid-specific ribosomal protein-related
           contains similarity to plastid-specific ribosomal
           protein 6 precursor GI:7578927 from [Spinacia oleracea]
          Length = 106

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 288 NDNSIGIVEDCAMRGFKRRILHARTLRPRGLNVW 389
           N   +G+V +C+ R  K+   H R  RP+    W
Sbjct: 30  NGGGLGMVIECSSRPQKKSTAHHRKTRPKKTQPW 63


>At5g54990.1 68418.m06848 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 226

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 15  KHDLLXSNTHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPH--LH 188
           KH+L+ ++T+   +  +       T K  IH+ A      +   I+TY  + R  H  L 
Sbjct: 6   KHELISTSTNETDRVINRCFLRKKTTKEVIHLKASQVESDSYSFIVTYQPNLRIRHENLD 65

Query: 189 GHQYKTT 209
           GHQ KTT
Sbjct: 66  GHQLKTT 72


>At2g13100.1 68415.m01436 glycerol-3-phosphate transporter, putative
           / glycerol 3-phosphate permease, putative similar to
           glycerol-3-phosphate transporter (glycerol 3-phosphate
           permease) [Homo sapiens] GI:7543982; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 493

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 285 FLALCVCLARIYRFVGTCCV*VNMCPLFCTDVRVDGDYA 169
           FLAL +    +YR  G+  + +N+  +F + + V+G YA
Sbjct: 362 FLALSIPALIMYRVYGSVSMFINIVLMFISGLLVNGPYA 400


>At3g07400.1 68416.m00882 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 1003

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 201 KTTDTYLLTHNMSLRIGKFEPNTRTVLKTNDNSIGIVED 317
           K  D  +L HN+S RI +++ N+ T+L+    ++ ++ D
Sbjct: 787 KKIDLIILVHNLSHRIPRYQ-NSTTLLQQQQPALALLLD 824


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,092,497
Number of Sequences: 28952
Number of extensions: 178533
Number of successful extensions: 364
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)