Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0899.Seq
         (259 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...   113   4e-27
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...   113   4e-27
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    27   0.54 
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   1.3  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   1.7  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    23   5.1  
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    23   5.1  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    23   6.7  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    23   6.7  

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score =  113 bits (272), Expect = 4e-27
 Identities = 53/85 (62%), Positives = 61/85 (71%)
 Frame = +1

Query: 1   HGTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVR 180
           HG I  STY+K  KVGDI  I  NGAVQKGMPHK YHGKTG VYNVT  ++GV++ K V 
Sbjct: 22  HGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVG 81

Query: 181 GRIXPXRIXIRVEHVKHXKXRQDFL 255
            R    R+ +R+EHVKH K RQDFL
Sbjct: 82  NRYMEKRVNVRIEHVKHSKCRQDFL 106


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score =  113 bits (272), Expect = 4e-27
 Identities = 53/85 (62%), Positives = 61/85 (71%)
 Frame = +1

Query: 1   HGTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVR 180
           HG I  STY+K  KVGDI  I  NGAVQKGMPHK YHGKTG VYNVT  ++GV++ K V 
Sbjct: 22  HGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVG 81

Query: 181 GRIXPXRIXIRVEHVKHXKXRQDFL 255
            R    R+ +R+EHVKH K RQDFL
Sbjct: 82  NRYMEKRVNVRIEHVKHSKCRQDFL 106


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 0.54
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +3

Query: 9   YSXLHVHESVQSWRHXXHHRQWCSSKGYATQSIPW 113
           +  L  H    SW      R+ C +KGY     PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 204 DAXRXNPSXNTLVDNHTES 148
           D  R N S N ++DNHT++
Sbjct: 29  DPARKNESTNDVIDNHTDT 47


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 121 GRVYNVTAHALGVIVNKRVRGRIXP 195
           G+ YN+T+H  G  VN     +  P
Sbjct: 234 GKTYNITSHVSGFYVNNCTSTKFDP 258


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 156 TESMSSHVVHATCLSMVYFVWHTLLNCTIAYDVXNVS 46
           TES+++H + A CL    ++ H +    +   V  V+
Sbjct: 144 TESLTAHYLFAMCLYRGLYIPHWIYRIAVHKKVIGVA 180


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = +1

Query: 94  PHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIXPXRIXIRVEHVKH 231
           PH +       +YN  A A+G+     VR       + I  E +++
Sbjct: 101 PHSIICDDRAHIYNWEAGAIGLFTQAIVRPISPKNNVYITAEEIEN 146


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 76  AVQKGMPHKVYHGKTGRVYNVTAH 147
           AV + +P+KV   + G V N+TA+
Sbjct: 289 AVGRDLPYKVTPRRAGDVVNLTAN 312


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 79  VQKGMPHKVYHGKTGRVYNVTA 144
           V K +P++V   +TG V N+TA
Sbjct: 292 VGKDLPYEVVGRRTGDVLNLTA 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 850,719
Number of Sequences: 5004
Number of extensions: 13321
Number of successful extensions: 48
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)