BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0899.Seq (259 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 113 4e-27 SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 113 4e-27 SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 0.54 SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 1.3 SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 1.7 SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|... 23 5.1 SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb... 23 5.1 SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 23 6.7 SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 23 6.7 >SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Schizosaccharomyces pombe|chr 1|||Manual Length = 160 Score = 113 bits (272), Expect = 4e-27 Identities = 53/85 (62%), Positives = 61/85 (71%) Frame = +1 Query: 1 HGTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVR 180 HG I STY+K KVGDI I NGAVQKGMPHK YHGKTG VYNVT ++GV++ K V Sbjct: 22 HGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVG 81 Query: 181 GRIXPXRIXIRVEHVKHXKXRQDFL 255 R R+ +R+EHVKH K RQDFL Sbjct: 82 NRYMEKRVNVRIEHVKHSKCRQDFL 106 >SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Schizosaccharomyces pombe|chr 2|||Manual Length = 160 Score = 113 bits (272), Expect = 4e-27 Identities = 53/85 (62%), Positives = 61/85 (71%) Frame = +1 Query: 1 HGTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVR 180 HG I STY+K KVGDI I NGAVQKGMPHK YHGKTG VYNVT ++GV++ K V Sbjct: 22 HGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVG 81 Query: 181 GRIXPXRIXIRVEHVKHXKXRQDFL 255 R R+ +R+EHVKH K RQDFL Sbjct: 82 NRYMEKRVNVRIEHVKHSKCRQDFL 106 >SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schizosaccharomyces pombe|chr 1|||Manual Length = 695 Score = 26.6 bits (56), Expect = 0.54 Identities = 11/35 (31%), Positives = 14/35 (40%) Frame = +3 Query: 9 YSXLHVHESVQSWRHXXHHRQWCSSKGYATQSIPW 113 + L H SW R+ C +KGY PW Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233 >SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces pombe|chr 2|||Manual Length = 419 Score = 25.4 bits (53), Expect = 1.3 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = -2 Query: 204 DAXRXNPSXNTLVDNHTES 148 D R N S N ++DNHT++ Sbjct: 29 DPARKNESTNDVIDNHTDT 47 >SPBC530.06c |||translation initiation factor eIF3 alpha subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 1173 Score = 25.0 bits (52), Expect = 1.7 Identities = 9/25 (36%), Positives = 13/25 (52%) Frame = +1 Query: 121 GRVYNVTAHALGVIVNKRVRGRIXP 195 G+ YN+T+H G VN + P Sbjct: 234 GKTYNITSHVSGFYVNNCTSTKFDP 258 >SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|||Manual Length = 212 Score = 23.4 bits (48), Expect = 5.1 Identities = 10/37 (27%), Positives = 19/37 (51%) Frame = -2 Query: 156 TESMSSHVVHATCLSMVYFVWHTLLNCTIAYDVXNVS 46 TES+++H + A CL ++ H + + V V+ Sbjct: 144 TESLTAHYLFAMCLYRGLYIPHWIYRIAVHKKVIGVA 180 >SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pombe|chr 1|||Manual Length = 376 Score = 23.4 bits (48), Expect = 5.1 Identities = 11/46 (23%), Positives = 19/46 (41%) Frame = +1 Query: 94 PHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIXPXRIXIRVEHVKH 231 PH + +YN A A+G+ VR + I E +++ Sbjct: 101 PHSIICDDRAHIYNWEAGAIGLFTQAIVRPISPKNNVYITAEEIEN 146 >SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pombe|chr 2|||Manual Length = 355 Score = 23.0 bits (47), Expect = 6.7 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +1 Query: 76 AVQKGMPHKVYHGKTGRVYNVTAH 147 AV + +P+KV + G V N+TA+ Sbjct: 289 AVGRDLPYKVTPRRAGDVVNLTAN 312 >SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pombe|chr 2|||Manual Length = 713 Score = 23.0 bits (47), Expect = 6.7 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +1 Query: 79 VQKGMPHKVYHGKTGRVYNVTA 144 V K +P++V +TG V N+TA Sbjct: 292 VGKDLPYEVVGRRTGDVLNLTA 313 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 850,719 Number of Sequences: 5004 Number of extensions: 13321 Number of successful extensions: 48 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 48 length of database: 2,362,478 effective HSP length: 60 effective length of database: 2,062,238 effective search space used: 51555950 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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