Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0899.Seq
(259 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0310 - 16669565-16669822,16670558-16670794 97 1e-21
03_01_0290 + 2246791-2247027,2248089-2248346 97 1e-21
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 29 0.52
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 29 0.68
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 28 0.90
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 27 1.6
09_06_0204 - 21559024-21559287,21559445-21559567,21559665-215597... 27 2.7
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122... 26 3.6
01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999 26 3.6
11_01_0428 + 3279662-3279784,3281676-3281756,3281845-3281933,328... 26 4.8
01_03_0300 + 14782156-14782225,14782708-14782780,14782800-147830... 26 4.8
01_01_0095 + 733307-734060,734779-734802,735029-736098 26 4.8
12_02_1038 - 25596027-25596393,25596492-25596660,25597283-255973... 25 6.3
08_02_1382 + 26565137-26565210,26565330-26565468,26565489-265656... 25 8.4
08_01_0987 + 9979651-9979746,9979818-9980058,9980947-9981090,998... 25 8.4
07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,203... 25 8.4
03_05_0978 - 29358778-29358857,29359149-29359289,29359375-293594... 25 8.4
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 97.5 bits (232), Expect = 1e-21
Identities = 43/83 (51%), Positives = 59/83 (71%)
Frame = +1
Query: 4 GTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRG 183
G IP +TY++ K+G+ + NGAV KGMPHK YHG+TGRV+NVT A+GV +NK+V
Sbjct: 23 GYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGN 82
Query: 184 RIXPXRIXIRVEHVKHXKXRQDF 252
RI RI +RVEHV+ + ++F
Sbjct: 83 RIIRKRIHVRVEHVQPSRCTEEF 105
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 97.5 bits (232), Expect = 1e-21
Identities = 43/82 (52%), Positives = 58/82 (70%)
Frame = +1
Query: 4 GTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRG 183
G IP +TY++ K+GD + NGAV KGMPHK YHG+TGRV+NVT A+GV +NK+V
Sbjct: 23 GYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGN 82
Query: 184 RIXPXRIXIRVEHVKHXKXRQD 249
RI RI +RVEHV+ + ++
Sbjct: 83 RIIRKRIHVRVEHVQPSRCTEE 104
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 29.1 bits (62), Expect = 0.52
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 45 WRHXXHHRQWCSSKGYATQSIPWKDRSRVQRDCS 146
W H QW YAT+ I W+ R+ V D S
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 28.7 bits (61), Expect = 0.68
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 78 SSKGYATQSIPWKDRSRVQRDC--SCSRCDCQQACSXKDYXE 197
+S G + Q P + R + Q D SC RC C+++ K Y E
Sbjct: 436 TSAGNSGQENPKRKRQKCQNDNVDSCKRCSCKKSKCLKLYCE 477
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 28.3 bits (60), Expect = 0.90
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 45 WRHXXHHRQWCSSKGYATQSIPWKDRSRVQRD 140
W H H QW YA++ W+ R V D
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 46 GDIXXIIGNGAVQKGMPHKVY 108
GDI I G+G+V K PH++Y
Sbjct: 626 GDIIVIWGDGSVSKVGPHEIY 646
>09_06_0204 - 21559024-21559287,21559445-21559567,21559665-21559718,
21559800-21560721,21560803-21561212,21561284-21561408,
21561524-21561571,21561668-21561789,21562008-21562099,
21562242-21562429,21562582-21562696,21562780-21562863,
21562994-21563087,21563393-21563510,21563805-21563930,
21564002-21564074,21564209-21564296,21564674-21564744,
21564839-21564918,21565004-21565065,21565169-21565310,
21565410-21565510,21565600-21565644,21565725-21565789,
21566088-21566163,21566246-21566300,21566416-21566773
Length = 1366
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 78 SSKGYATQSIPWKDRSR-VQRDCSCSRCDCQQAC 176
S++G A S W ++ V + +C C C+ AC
Sbjct: 1166 SNEGSAHNSSFWSEKDGCVYKPVTCQTCSCKNAC 1199
>07_01_0174 -
1227871-1228043,1228303-1228423,1228519-1228588,
1228877-1228953,1229215-1229393,1229558-1229684,
1229849-1229861,1230351-1230378,1230426-1230516,
1230870-1230956,1231239-1231276,1231426-1231464,
1231553-1231699,1231899-1231958,1232033-1232111,
1232429-1232517,1232906-1232967,1233238-1233427,
1233929-1234068,1235813-1236147,1237086-1237133
Length = 730
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 88 GMPHKVYHGKTGRVYNVTAHALGVIVN 168
G P G T VY+V AH+ GVIV+
Sbjct: 137 GQPLLEMIGHTSLVYSVDAHSSGVIVS 163
>01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999
Length = 764
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +3
Query: 114 KDRSRVQRDCSCSRCDCQQACSXKDYXEXHXY 209
K ++ CSCS+ D +CS D Y
Sbjct: 270 KGHLSIEEPCSCSKDDTDSSCSLADEHHARHY 301
>11_01_0428 +
3279662-3279784,3281676-3281756,3281845-3281933,
3282011-3282085,3282211-3282269,3282316-3282414,
3282762-3283013,3283050-3283180
Length = 302
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 63 HRQWCSSKGYATQSIPW 113
HR W KG T +IPW
Sbjct: 276 HRTWQGKKGRRTGTIPW 292
>01_03_0300 +
14782156-14782225,14782708-14782780,14782800-14783076,
14783715-14783885,14783992-14784012
Length = 203
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 27 HESVQSWRHXXHHRQWCSSKGYATQSI 107
HE +Q WR +R WC +AT ++
Sbjct: 96 HEVLQ-WRRAWDNRSWCDFAPFATTNL 121
>01_01_0095 + 733307-734060,734779-734802,735029-736098
Length = 615
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Frame = +3
Query: 72 WCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSXKDYXEXHXY--PC 215
WCS G + + S SCS + ACS D H + PC
Sbjct: 18 WCSDSGPEIRFPHQLESSNSSSSSSCSASCARLACSGPDTILHHPFLGPC 67
>12_02_1038 -
25596027-25596393,25596492-25596660,25597283-25597349,
25597617-25597794,25599157-25599228,25599311-25599717,
25600035-25600740,25600829-25600998,25601963-25602022,
25602385-25602435
Length = 748
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +3
Query: 87 GYATQSIPWKDRSRVQRD--CSCSRCDCQQACSXKDYXE 197
G ++Q P K R + SC RC C+++ K Y E
Sbjct: 454 GESSQGSPKKKRHKFDNGDGTSCKRCSCKKSKCLKLYCE 492
>08_02_1382 +
26565137-26565210,26565330-26565468,26565489-26565603,
26565761-26565828,26565907-26566551,26566927-26567031,
26567115-26567465
Length = 498
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 75 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 167
C+ +GY ++ +DR ++ D C+ D Q
Sbjct: 300 CAERGYTLVNVRCRDRPKLLFDTVCTLTDMQ 330
>08_01_0987 +
9979651-9979746,9979818-9980058,9980947-9981090,
9981253-9981313,9981603-9982061,9982472-9982529,
9983579-9983839
Length = 439
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 119 VFPWYTLCGIPF*TAPLPXXXXMSPTL 39
V PW T CG+ F +P P S +L
Sbjct: 408 VQPWVTGCGVVFGPSPRPPCTSASSSL 434
>07_01_0276 +
2028983-2029070,2030084-2030151,2030317-2031246,
2031334-2031415,2031544-2031609,2032606-2033304,
2033422-2035424,2035599-2036173,2037060-2037223,
2037306-2037365,2037475-2037839
Length = 1699
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 67 GNGAVQKGMPHKVYHGKTGRVYNVTA 144
G+ A +KG H + HGK G + A
Sbjct: 192 GDAAREKGFSHYIAHGKDGNSHEKDA 217
>03_05_0978 -
29358778-29358857,29359149-29359289,29359375-29359468,
29360931-29361170,29361438-29361488,29361850-29361936,
29362189-29362256,29362393-29362447,29362569-29362630,
29362751-29362951,29363043-29363202,29363294-29363482
Length = 475
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +3
Query: 78 SSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSXKD 188
SS+ + + WKD +R+Q + + + +C+ +D
Sbjct: 186 SSRSFYKGILMWKDETRIQMETREREEESKSSCAARD 222
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,712,080
Number of Sequences: 37544
Number of extensions: 94670
Number of successful extensions: 249
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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