BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0899.Seq (259 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 10_08_0310 - 16669565-16669822,16670558-16670794 97 1e-21 03_01_0290 + 2246791-2247027,2248089-2248346 97 1e-21 08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 29 0.52 03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 29 0.68 05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 28 0.90 01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 27 1.6 09_06_0204 - 21559024-21559287,21559445-21559567,21559665-215597... 27 2.7 07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122... 26 3.6 01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999 26 3.6 11_01_0428 + 3279662-3279784,3281676-3281756,3281845-3281933,328... 26 4.8 01_03_0300 + 14782156-14782225,14782708-14782780,14782800-147830... 26 4.8 01_01_0095 + 733307-734060,734779-734802,735029-736098 26 4.8 12_02_1038 - 25596027-25596393,25596492-25596660,25597283-255973... 25 6.3 08_02_1382 + 26565137-26565210,26565330-26565468,26565489-265656... 25 8.4 08_01_0987 + 9979651-9979746,9979818-9980058,9980947-9981090,998... 25 8.4 07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,203... 25 8.4 03_05_0978 - 29358778-29358857,29359149-29359289,29359375-293594... 25 8.4 >10_08_0310 - 16669565-16669822,16670558-16670794 Length = 164 Score = 97.5 bits (232), Expect = 1e-21 Identities = 43/83 (51%), Positives = 59/83 (71%) Frame = +1 Query: 4 GTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRG 183 G IP +TY++ K+G+ + NGAV KGMPHK YHG+TGRV+NVT A+GV +NK+V Sbjct: 23 GYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGN 82 Query: 184 RIXPXRIXIRVEHVKHXKXRQDF 252 RI RI +RVEHV+ + ++F Sbjct: 83 RIIRKRIHVRVEHVQPSRCTEEF 105 >03_01_0290 + 2246791-2247027,2248089-2248346 Length = 164 Score = 97.5 bits (232), Expect = 1e-21 Identities = 43/82 (52%), Positives = 58/82 (70%) Frame = +1 Query: 4 GTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRG 183 G IP +TY++ K+GD + NGAV KGMPHK YHG+TGRV+NVT A+GV +NK+V Sbjct: 23 GYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGN 82 Query: 184 RIXPXRIXIRVEHVKHXKXRQD 249 RI RI +RVEHV+ + ++ Sbjct: 83 RIIRKRIHVRVEHVQPSRCTEE 104 >08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715, 2304824-2305096,2305454-2305558,2305635-2305851, 2306012-2306262,2306518-2306724,2307087-2307351, 2308655-2308749 Length = 580 Score = 29.1 bits (62), Expect = 0.52 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = +3 Query: 45 WRHXXHHRQWCSSKGYATQSIPWKDRSRVQRDCS 146 W H QW YAT+ I W+ R+ V D S Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568 >03_05_0435 - 24259864-24260206,24260302-24260467,24261175-24261241, 24261553-24261648,24261718-24261898,24262252-24262323, 24262393-24262505,24262596-24262817,24263262-24263910, 24264118-24264206,24265932-24266015,24266219-24266358, 24266522-24266573 Length = 757 Score = 28.7 bits (61), Expect = 0.68 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Frame = +3 Query: 78 SSKGYATQSIPWKDRSRVQRDC--SCSRCDCQQACSXKDYXE 197 +S G + Q P + R + Q D SC RC C+++ K Y E Sbjct: 436 TSAGNSGQENPKRKRQKCQNDNVDSCKRCSCKKSKCLKLYCE 477 >05_03_0549 - 15349259-15349346,15349466-15349585,15349899-15350020, 15350511-15350783,15351398-15351502,15351588-15351804, 15352031-15352281,15352582-15352776,15352881-15353139, 15354617-15354714 Length = 575 Score = 28.3 bits (60), Expect = 0.90 Identities = 11/32 (34%), Positives = 14/32 (43%) Frame = +3 Query: 45 WRHXXHHRQWCSSKGYATQSIPWKDRSRVQRD 140 W H H QW YA++ W+ R V D Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561 >01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990, 1425183-1425252,1425356-1425495,1425620-1425679, 1425776-1425931,1426272-1426541 Length = 1056 Score = 27.5 bits (58), Expect = 1.6 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +1 Query: 46 GDIXXIIGNGAVQKGMPHKVY 108 GDI I G+G+V K PH++Y Sbjct: 626 GDIIVIWGDGSVSKVGPHEIY 646 >09_06_0204 - 21559024-21559287,21559445-21559567,21559665-21559718, 21559800-21560721,21560803-21561212,21561284-21561408, 21561524-21561571,21561668-21561789,21562008-21562099, 21562242-21562429,21562582-21562696,21562780-21562863, 21562994-21563087,21563393-21563510,21563805-21563930, 21564002-21564074,21564209-21564296,21564674-21564744, 21564839-21564918,21565004-21565065,21565169-21565310, 21565410-21565510,21565600-21565644,21565725-21565789, 21566088-21566163,21566246-21566300,21566416-21566773 Length = 1366 Score = 26.6 bits (56), Expect = 2.7 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = +3 Query: 78 SSKGYATQSIPWKDRSR-VQRDCSCSRCDCQQAC 176 S++G A S W ++ V + +C C C+ AC Sbjct: 1166 SNEGSAHNSSFWSEKDGCVYKPVTCQTCSCKNAC 1199 >07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588, 1228877-1228953,1229215-1229393,1229558-1229684, 1229849-1229861,1230351-1230378,1230426-1230516, 1230870-1230956,1231239-1231276,1231426-1231464, 1231553-1231699,1231899-1231958,1232033-1232111, 1232429-1232517,1232906-1232967,1233238-1233427, 1233929-1234068,1235813-1236147,1237086-1237133 Length = 730 Score = 26.2 bits (55), Expect = 3.6 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +1 Query: 88 GMPHKVYHGKTGRVYNVTAHALGVIVN 168 G P G T VY+V AH+ GVIV+ Sbjct: 137 GQPLLEMIGHTSLVYSVDAHSSGVIVS 163 >01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999 Length = 764 Score = 26.2 bits (55), Expect = 3.6 Identities = 10/32 (31%), Positives = 14/32 (43%) Frame = +3 Query: 114 KDRSRVQRDCSCSRCDCQQACSXKDYXEXHXY 209 K ++ CSCS+ D +CS D Y Sbjct: 270 KGHLSIEEPCSCSKDDTDSSCSLADEHHARHY 301 >11_01_0428 + 3279662-3279784,3281676-3281756,3281845-3281933, 3282011-3282085,3282211-3282269,3282316-3282414, 3282762-3283013,3283050-3283180 Length = 302 Score = 25.8 bits (54), Expect = 4.8 Identities = 9/17 (52%), Positives = 10/17 (58%) Frame = +3 Query: 63 HRQWCSSKGYATQSIPW 113 HR W KG T +IPW Sbjct: 276 HRTWQGKKGRRTGTIPW 292 >01_03_0300 + 14782156-14782225,14782708-14782780,14782800-14783076, 14783715-14783885,14783992-14784012 Length = 203 Score = 25.8 bits (54), Expect = 4.8 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = +3 Query: 27 HESVQSWRHXXHHRQWCSSKGYATQSI 107 HE +Q WR +R WC +AT ++ Sbjct: 96 HEVLQ-WRRAWDNRSWCDFAPFATTNL 121 >01_01_0095 + 733307-734060,734779-734802,735029-736098 Length = 615 Score = 25.8 bits (54), Expect = 4.8 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 2/50 (4%) Frame = +3 Query: 72 WCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSXKDYXEXHXY--PC 215 WCS G + + S SCS + ACS D H + PC Sbjct: 18 WCSDSGPEIRFPHQLESSNSSSSSSCSASCARLACSGPDTILHHPFLGPC 67 >12_02_1038 - 25596027-25596393,25596492-25596660,25597283-25597349, 25597617-25597794,25599157-25599228,25599311-25599717, 25600035-25600740,25600829-25600998,25601963-25602022, 25602385-25602435 Length = 748 Score = 25.4 bits (53), Expect = 6.3 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%) Frame = +3 Query: 87 GYATQSIPWKDRSRVQRD--CSCSRCDCQQACSXKDYXE 197 G ++Q P K R + SC RC C+++ K Y E Sbjct: 454 GESSQGSPKKKRHKFDNGDGTSCKRCSCKKSKCLKLYCE 492 >08_02_1382 + 26565137-26565210,26565330-26565468,26565489-26565603, 26565761-26565828,26565907-26566551,26566927-26567031, 26567115-26567465 Length = 498 Score = 25.0 bits (52), Expect = 8.4 Identities = 9/31 (29%), Positives = 17/31 (54%) Frame = +3 Query: 75 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 167 C+ +GY ++ +DR ++ D C+ D Q Sbjct: 300 CAERGYTLVNVRCRDRPKLLFDTVCTLTDMQ 330 >08_01_0987 + 9979651-9979746,9979818-9980058,9980947-9981090, 9981253-9981313,9981603-9982061,9982472-9982529, 9983579-9983839 Length = 439 Score = 25.0 bits (52), Expect = 8.4 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = -3 Query: 119 VFPWYTLCGIPF*TAPLPXXXXMSPTL 39 V PW T CG+ F +P P S +L Sbjct: 408 VQPWVTGCGVVFGPSPRPPCTSASSSL 434 >07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246, 2031334-2031415,2031544-2031609,2032606-2033304, 2033422-2035424,2035599-2036173,2037060-2037223, 2037306-2037365,2037475-2037839 Length = 1699 Score = 25.0 bits (52), Expect = 8.4 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = +1 Query: 67 GNGAVQKGMPHKVYHGKTGRVYNVTA 144 G+ A +KG H + HGK G + A Sbjct: 192 GDAAREKGFSHYIAHGKDGNSHEKDA 217 >03_05_0978 - 29358778-29358857,29359149-29359289,29359375-29359468, 29360931-29361170,29361438-29361488,29361850-29361936, 29362189-29362256,29362393-29362447,29362569-29362630, 29362751-29362951,29363043-29363202,29363294-29363482 Length = 475 Score = 25.0 bits (52), Expect = 8.4 Identities = 9/37 (24%), Positives = 20/37 (54%) Frame = +3 Query: 78 SSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSXKD 188 SS+ + + WKD +R+Q + + + +C+ +D Sbjct: 186 SSRSFYKGILMWKDETRIQMETREREEESKSSCAARD 222 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,712,080 Number of Sequences: 37544 Number of extensions: 94670 Number of successful extensions: 249 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 248 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 249 length of database: 14,793,348 effective HSP length: 64 effective length of database: 12,390,532 effective search space used: 260201172 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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