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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0899.Seq
         (259 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0310 - 16669565-16669822,16670558-16670794                       97   1e-21
03_01_0290 + 2246791-2247027,2248089-2248346                           97   1e-21
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230...    29   0.52 
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612...    29   0.68 
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500...    28   0.90 
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142...    27   1.6  
09_06_0204 - 21559024-21559287,21559445-21559567,21559665-215597...    27   2.7  
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122...    26   3.6  
01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999     26   3.6  
11_01_0428 + 3279662-3279784,3281676-3281756,3281845-3281933,328...    26   4.8  
01_03_0300 + 14782156-14782225,14782708-14782780,14782800-147830...    26   4.8  
01_01_0095 + 733307-734060,734779-734802,735029-736098                 26   4.8  
12_02_1038 - 25596027-25596393,25596492-25596660,25597283-255973...    25   6.3  
08_02_1382 + 26565137-26565210,26565330-26565468,26565489-265656...    25   8.4  
08_01_0987 + 9979651-9979746,9979818-9980058,9980947-9981090,998...    25   8.4  
07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,203...    25   8.4  
03_05_0978 - 29358778-29358857,29359149-29359289,29359375-293594...    25   8.4  

>10_08_0310 - 16669565-16669822,16670558-16670794
          Length = 164

 Score = 97.5 bits (232), Expect = 1e-21
 Identities = 43/83 (51%), Positives = 59/83 (71%)
 Frame = +1

Query: 4   GTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRG 183
           G IP +TY++  K+G+   +  NGAV KGMPHK YHG+TGRV+NVT  A+GV +NK+V  
Sbjct: 23  GYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGN 82

Query: 184 RIXPXRIXIRVEHVKHXKXRQDF 252
           RI   RI +RVEHV+  +  ++F
Sbjct: 83  RIIRKRIHVRVEHVQPSRCTEEF 105


>03_01_0290 + 2246791-2247027,2248089-2248346
          Length = 164

 Score = 97.5 bits (232), Expect = 1e-21
 Identities = 43/82 (52%), Positives = 58/82 (70%)
 Frame = +1

Query: 4   GTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRG 183
           G IP +TY++  K+GD   +  NGAV KGMPHK YHG+TGRV+NVT  A+GV +NK+V  
Sbjct: 23  GYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGN 82

Query: 184 RIXPXRIXIRVEHVKHXKXRQD 249
           RI   RI +RVEHV+  +  ++
Sbjct: 83  RIIRKRIHVRVEHVQPSRCTEE 104


>08_01_0283 -
           2304024-2304111,2304224-2304343,2304594-2304715,
           2304824-2305096,2305454-2305558,2305635-2305851,
           2306012-2306262,2306518-2306724,2307087-2307351,
           2308655-2308749
          Length = 580

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 45  WRHXXHHRQWCSSKGYATQSIPWKDRSRVQRDCS 146
           W    H  QW     YAT+ I W+ R+ V  D S
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568


>03_05_0435 -
           24259864-24260206,24260302-24260467,24261175-24261241,
           24261553-24261648,24261718-24261898,24262252-24262323,
           24262393-24262505,24262596-24262817,24263262-24263910,
           24264118-24264206,24265932-24266015,24266219-24266358,
           24266522-24266573
          Length = 757

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 78  SSKGYATQSIPWKDRSRVQRDC--SCSRCDCQQACSXKDYXE 197
           +S G + Q  P + R + Q D   SC RC C+++   K Y E
Sbjct: 436 TSAGNSGQENPKRKRQKCQNDNVDSCKRCSCKKSKCLKLYCE 477


>05_03_0549 -
           15349259-15349346,15349466-15349585,15349899-15350020,
           15350511-15350783,15351398-15351502,15351588-15351804,
           15352031-15352281,15352582-15352776,15352881-15353139,
           15354617-15354714
          Length = 575

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 45  WRHXXHHRQWCSSKGYATQSIPWKDRSRVQRD 140
           W H  H  QW     YA++   W+ R  V  D
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561


>01_01_0167 +
           1422344-1424260,1424338-1424472,1424568-1424990,
           1425183-1425252,1425356-1425495,1425620-1425679,
           1425776-1425931,1426272-1426541
          Length = 1056

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 46  GDIXXIIGNGAVQKGMPHKVY 108
           GDI  I G+G+V K  PH++Y
Sbjct: 626 GDIIVIWGDGSVSKVGPHEIY 646


>09_06_0204 - 21559024-21559287,21559445-21559567,21559665-21559718,
            21559800-21560721,21560803-21561212,21561284-21561408,
            21561524-21561571,21561668-21561789,21562008-21562099,
            21562242-21562429,21562582-21562696,21562780-21562863,
            21562994-21563087,21563393-21563510,21563805-21563930,
            21564002-21564074,21564209-21564296,21564674-21564744,
            21564839-21564918,21565004-21565065,21565169-21565310,
            21565410-21565510,21565600-21565644,21565725-21565789,
            21566088-21566163,21566246-21566300,21566416-21566773
          Length = 1366

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 78   SSKGYATQSIPWKDRSR-VQRDCSCSRCDCQQAC 176
            S++G A  S  W ++   V +  +C  C C+ AC
Sbjct: 1166 SNEGSAHNSSFWSEKDGCVYKPVTCQTCSCKNAC 1199


>07_01_0174 -
           1227871-1228043,1228303-1228423,1228519-1228588,
           1228877-1228953,1229215-1229393,1229558-1229684,
           1229849-1229861,1230351-1230378,1230426-1230516,
           1230870-1230956,1231239-1231276,1231426-1231464,
           1231553-1231699,1231899-1231958,1232033-1232111,
           1232429-1232517,1232906-1232967,1233238-1233427,
           1233929-1234068,1235813-1236147,1237086-1237133
          Length = 730

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 88  GMPHKVYHGKTGRVYNVTAHALGVIVN 168
           G P     G T  VY+V AH+ GVIV+
Sbjct: 137 GQPLLEMIGHTSLVYSVDAHSSGVIVS 163


>01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999
          Length = 764

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 114 KDRSRVQRDCSCSRCDCQQACSXKDYXEXHXY 209
           K    ++  CSCS+ D   +CS  D      Y
Sbjct: 270 KGHLSIEEPCSCSKDDTDSSCSLADEHHARHY 301


>11_01_0428 +
           3279662-3279784,3281676-3281756,3281845-3281933,
           3282011-3282085,3282211-3282269,3282316-3282414,
           3282762-3283013,3283050-3283180
          Length = 302

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 63  HRQWCSSKGYATQSIPW 113
           HR W   KG  T +IPW
Sbjct: 276 HRTWQGKKGRRTGTIPW 292


>01_03_0300 +
           14782156-14782225,14782708-14782780,14782800-14783076,
           14783715-14783885,14783992-14784012
          Length = 203

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 27  HESVQSWRHXXHHRQWCSSKGYATQSI 107
           HE +Q WR    +R WC    +AT ++
Sbjct: 96  HEVLQ-WRRAWDNRSWCDFAPFATTNL 121


>01_01_0095 + 733307-734060,734779-734802,735029-736098
          Length = 615

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
 Frame = +3

Query: 72  WCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSXKDYXEXHXY--PC 215
           WCS  G   +     + S      SCS    + ACS  D    H +  PC
Sbjct: 18  WCSDSGPEIRFPHQLESSNSSSSSSCSASCARLACSGPDTILHHPFLGPC 67


>12_02_1038 -
           25596027-25596393,25596492-25596660,25597283-25597349,
           25597617-25597794,25599157-25599228,25599311-25599717,
           25600035-25600740,25600829-25600998,25601963-25602022,
           25602385-25602435
          Length = 748

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 87  GYATQSIPWKDRSRVQRD--CSCSRCDCQQACSXKDYXE 197
           G ++Q  P K R +       SC RC C+++   K Y E
Sbjct: 454 GESSQGSPKKKRHKFDNGDGTSCKRCSCKKSKCLKLYCE 492


>08_02_1382 +
           26565137-26565210,26565330-26565468,26565489-26565603,
           26565761-26565828,26565907-26566551,26566927-26567031,
           26567115-26567465
          Length = 498

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 75  CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 167
           C+ +GY   ++  +DR ++  D  C+  D Q
Sbjct: 300 CAERGYTLVNVRCRDRPKLLFDTVCTLTDMQ 330


>08_01_0987 +
           9979651-9979746,9979818-9980058,9980947-9981090,
           9981253-9981313,9981603-9982061,9982472-9982529,
           9983579-9983839
          Length = 439

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 119 VFPWYTLCGIPF*TAPLPXXXXMSPTL 39
           V PW T CG+ F  +P P     S +L
Sbjct: 408 VQPWVTGCGVVFGPSPRPPCTSASSSL 434


>07_01_0276 +
           2028983-2029070,2030084-2030151,2030317-2031246,
           2031334-2031415,2031544-2031609,2032606-2033304,
           2033422-2035424,2035599-2036173,2037060-2037223,
           2037306-2037365,2037475-2037839
          Length = 1699

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 67  GNGAVQKGMPHKVYHGKTGRVYNVTA 144
           G+ A +KG  H + HGK G  +   A
Sbjct: 192 GDAAREKGFSHYIAHGKDGNSHEKDA 217


>03_05_0978 -
           29358778-29358857,29359149-29359289,29359375-29359468,
           29360931-29361170,29361438-29361488,29361850-29361936,
           29362189-29362256,29362393-29362447,29362569-29362630,
           29362751-29362951,29363043-29363202,29363294-29363482
          Length = 475

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +3

Query: 78  SSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSXKD 188
           SS+ +    + WKD +R+Q +      + + +C+ +D
Sbjct: 186 SSRSFYKGILMWKDETRIQMETREREEESKSSCAARD 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,712,080
Number of Sequences: 37544
Number of extensions: 94670
Number of successful extensions: 249
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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