Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0899.Seq
         (259 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                      100   4e-22
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)            28   1.4  
SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.2  
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.2  
SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2)             26   4.2  
SB_51058| Best HMM Match : EGF (HMM E-Value=0.11)                      26   4.2  
SB_32619| Best HMM Match : FCH (HMM E-Value=7.1e-23)                   26   4.2  
SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15)           26   5.6  
SB_37902| Best HMM Match : RPH3A_effector (HMM E-Value=7.6e-10)        25   7.4  
SB_380| Best HMM Match : AAA (HMM E-Value=0.14)                        25   7.4  
SB_57242| Best HMM Match : Extensin_2 (HMM E-Value=2.4)                25   9.7  
SB_29370| Best HMM Match : fn3 (HMM E-Value=0)                         25   9.7  
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  25   9.7  

>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score = 99.5 bits (237), Expect = 4e-22
 Identities = 45/62 (72%), Positives = 51/62 (82%)
 Frame = +1

Query: 19  STYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIXPX 198
           STY+K  KVGDI  +  NGAVQKGMPHKVYHGKTGRVYNVT  ALGV+VNK+V+G+I   
Sbjct: 450 STYLKCYKVGDIVDVKANGAVQKGMPHKVYHGKTGRVYNVTKRALGVVVNKQVKGKILAK 509

Query: 199 RI 204
           RI
Sbjct: 510 RI 511


>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
          Length = 1139

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 75  CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQ 170
           C+S    +      D+S VQ+DCS  R DC +
Sbjct: 736 CNSSDIGSTPTILSDKSPVQQDCSSIRRDCSR 767


>SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 162 NHTESMSSHVVHATCLSMVYFVWHTLLNCTIAYDVXNVSNFXHFHV 25
           N T +   H  H T +S  +    T ++ T  Y++ N S   H+++
Sbjct: 219 NITNTSLQHHEHITTISRTHHEHITTISRTHHYNITNTSRTNHYNI 264



 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -2

Query: 162 NHTESMSSHVVHATCLSMVYFVWHTLLNCTIAYDVXNVSNFXHFHV 25
           N T +   H  H T +S  +    T ++ T  Y++ N S   H H+
Sbjct: 186 NITNTSLQHHEHITTISRTHHEHITTISRTHHYNITNTSLQHHEHI 231


>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1937

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 64   IGNGAVQKGMPHKVYHGKTGRVYNVTA 144
            IG  +   G+P K Y G++G++++V A
Sbjct: 1639 IGMDSKDPGVPLKTYVGQSGKIFDVKA 1665


>SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2)
          Length = 225

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 162 NHTESMSSHVVHATCLSMVYFVWHTLLNCTIAYDVXNVSNFXHFHV 25
           N T +   H  H T +S  +    T ++ T  Y++ N S   H+++
Sbjct: 152 NITNTSLQHHEHITTISRTHHEHITTISRTHHYNITNTSRTNHYNI 197



 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -2

Query: 162 NHTESMSSHVVHATCLSMVYFVWHTLLNCTIAYDVXNVSNFXHFHV 25
           N T +   H  H T +S  +    T ++ T  Y++ N S   H H+
Sbjct: 119 NITNTSLQHHEHITTISRTHHEHITTISRTHHYNITNTSLQHHEHI 164


>SB_51058| Best HMM Match : EGF (HMM E-Value=0.11)
          Length = 148

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 64  IGNGAVQKGMPHKVYHGKTGRVYNVTA 144
           IG  +   G+P K Y G++G++++V A
Sbjct: 69  IGMDSKDPGVPLKTYVGQSGKIFDVKA 95


>SB_32619| Best HMM Match : FCH (HMM E-Value=7.1e-23)
          Length = 334

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
 Frame = +3

Query: 24  VHESVQSWRHXXHHR---QWCSSK----GYATQSIPWKDRSRVQRDCSCSRCDCQQACSX 182
           VHESV +W+   +H+    W  +K    G++    PW  R     D   S+     AC  
Sbjct: 141 VHESVAAWKGANYHKSLLSWKETKNAEEGFSKAQRPWAKR---YDDVLKSKKAYYAACRA 197

Query: 183 KDYXE 197
           +D  E
Sbjct: 198 RDQAE 202


>SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15)
          Length = 930

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 165 DNHTESMSSHVVHATCLSMVYFVWHTLLNCTIAYDVXN 52
           D   ES  +HVV  T +S++YF     L  ++   V N
Sbjct: 753 DKDPESYPAHVVIFTIMSIIYFTIGLALVSSVLLSVRN 790


>SB_37902| Best HMM Match : RPH3A_effector (HMM E-Value=7.6e-10)
          Length = 314

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
 Frame = +1

Query: 94  PHKVYHGKTGRV------YNVTAHALGVIVNKRVRGRI 189
           P KV   K GRV      YN+T    G++   ++RG +
Sbjct: 204 PEKVLETKFGRVEYQYLEYNITTQLAGIVNGSKLRGEM 241


>SB_380| Best HMM Match : AAA (HMM E-Value=0.14)
          Length = 508

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 189 NPSXNTLVDNHTESMSSHVVHATCLSMVYFVWHTLLNCTIA 67
           NPS ++   ++    +SH +  TCL +VY+ W T  + T++
Sbjct: 398 NPSRSS---HYRSVRNSHCLQTTCLYLVYY-WLTHKHVTVS 434


>SB_57242| Best HMM Match : Extensin_2 (HMM E-Value=2.4)
          Length = 308

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 212 RIXMRFGIILPRTRLLTITPRA*AVTLY 129
           RI   FGI+LPR    T  PR   V  Y
Sbjct: 3   RIPYSFGIVLPRPTRQTREPRTPLVVSY 30


>SB_29370| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 579

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 87  GYATQSIPWKDRSRVQRDCSCS 152
           GYA   + W+D S  +   SCS
Sbjct: 195 GYAVSFVGWRDESIAREHLSCS 216


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 135  RDCSCSRCDCQQACSXKDYXEXHXYPC 215
            +D +C  CD  Q C   +    H  PC
Sbjct: 2330 QDPNCGWCDSAQQCMPGNQTRPHQEPC 2356


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,811,669
Number of Sequences: 59808
Number of extensions: 119517
Number of successful extensions: 296
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 16,821,457
effective HSP length: 62
effective length of database: 13,113,361
effective search space used: 301607303
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)