BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0899.Seq (259 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 100 4e-22 SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71) 28 1.4 SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.2 SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.2 SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2) 26 4.2 SB_51058| Best HMM Match : EGF (HMM E-Value=0.11) 26 4.2 SB_32619| Best HMM Match : FCH (HMM E-Value=7.1e-23) 26 4.2 SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15) 26 5.6 SB_37902| Best HMM Match : RPH3A_effector (HMM E-Value=7.6e-10) 25 7.4 SB_380| Best HMM Match : AAA (HMM E-Value=0.14) 25 7.4 SB_57242| Best HMM Match : Extensin_2 (HMM E-Value=2.4) 25 9.7 SB_29370| Best HMM Match : fn3 (HMM E-Value=0) 25 9.7 SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 25 9.7 >SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) Length = 768 Score = 99.5 bits (237), Expect = 4e-22 Identities = 45/62 (72%), Positives = 51/62 (82%) Frame = +1 Query: 19 STYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIXPX 198 STY+K KVGDI + NGAVQKGMPHKVYHGKTGRVYNVT ALGV+VNK+V+G+I Sbjct: 450 STYLKCYKVGDIVDVKANGAVQKGMPHKVYHGKTGRVYNVTKRALGVVVNKQVKGKILAK 509 Query: 199 RI 204 RI Sbjct: 510 RI 511 >SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71) Length = 1139 Score = 27.9 bits (59), Expect = 1.4 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +3 Query: 75 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQ 170 C+S + D+S VQ+DCS R DC + Sbjct: 736 CNSSDIGSTPTILSDKSPVQQDCSSIRRDCSR 767 >SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 292 Score = 26.2 bits (55), Expect = 4.2 Identities = 12/46 (26%), Positives = 22/46 (47%) Frame = -2 Query: 162 NHTESMSSHVVHATCLSMVYFVWHTLLNCTIAYDVXNVSNFXHFHV 25 N T + H H T +S + T ++ T Y++ N S H+++ Sbjct: 219 NITNTSLQHHEHITTISRTHHEHITTISRTHHYNITNTSRTNHYNI 264 Score = 25.0 bits (52), Expect = 9.7 Identities = 13/46 (28%), Positives = 21/46 (45%) Frame = -2 Query: 162 NHTESMSSHVVHATCLSMVYFVWHTLLNCTIAYDVXNVSNFXHFHV 25 N T + H H T +S + T ++ T Y++ N S H H+ Sbjct: 186 NITNTSLQHHEHITTISRTHHEHITTISRTHHYNITNTSLQHHEHI 231 >SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1937 Score = 26.2 bits (55), Expect = 4.2 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = +1 Query: 64 IGNGAVQKGMPHKVYHGKTGRVYNVTA 144 IG + G+P K Y G++G++++V A Sbjct: 1639 IGMDSKDPGVPLKTYVGQSGKIFDVKA 1665 >SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2) Length = 225 Score = 26.2 bits (55), Expect = 4.2 Identities = 12/46 (26%), Positives = 22/46 (47%) Frame = -2 Query: 162 NHTESMSSHVVHATCLSMVYFVWHTLLNCTIAYDVXNVSNFXHFHV 25 N T + H H T +S + T ++ T Y++ N S H+++ Sbjct: 152 NITNTSLQHHEHITTISRTHHEHITTISRTHHYNITNTSRTNHYNI 197 Score = 25.0 bits (52), Expect = 9.7 Identities = 13/46 (28%), Positives = 21/46 (45%) Frame = -2 Query: 162 NHTESMSSHVVHATCLSMVYFVWHTLLNCTIAYDVXNVSNFXHFHV 25 N T + H H T +S + T ++ T Y++ N S H H+ Sbjct: 119 NITNTSLQHHEHITTISRTHHEHITTISRTHHYNITNTSLQHHEHI 164 >SB_51058| Best HMM Match : EGF (HMM E-Value=0.11) Length = 148 Score = 26.2 bits (55), Expect = 4.2 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = +1 Query: 64 IGNGAVQKGMPHKVYHGKTGRVYNVTA 144 IG + G+P K Y G++G++++V A Sbjct: 69 IGMDSKDPGVPLKTYVGQSGKIFDVKA 95 >SB_32619| Best HMM Match : FCH (HMM E-Value=7.1e-23) Length = 334 Score = 26.2 bits (55), Expect = 4.2 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Frame = +3 Query: 24 VHESVQSWRHXXHHR---QWCSSK----GYATQSIPWKDRSRVQRDCSCSRCDCQQACSX 182 VHESV +W+ +H+ W +K G++ PW R D S+ AC Sbjct: 141 VHESVAAWKGANYHKSLLSWKETKNAEEGFSKAQRPWAKR---YDDVLKSKKAYYAACRA 197 Query: 183 KDYXE 197 +D E Sbjct: 198 RDQAE 202 >SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15) Length = 930 Score = 25.8 bits (54), Expect = 5.6 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -2 Query: 165 DNHTESMSSHVVHATCLSMVYFVWHTLLNCTIAYDVXN 52 D ES +HVV T +S++YF L ++ V N Sbjct: 753 DKDPESYPAHVVIFTIMSIIYFTIGLALVSSVLLSVRN 790 >SB_37902| Best HMM Match : RPH3A_effector (HMM E-Value=7.6e-10) Length = 314 Score = 25.4 bits (53), Expect = 7.4 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 6/38 (15%) Frame = +1 Query: 94 PHKVYHGKTGRV------YNVTAHALGVIVNKRVRGRI 189 P KV K GRV YN+T G++ ++RG + Sbjct: 204 PEKVLETKFGRVEYQYLEYNITTQLAGIVNGSKLRGEM 241 >SB_380| Best HMM Match : AAA (HMM E-Value=0.14) Length = 508 Score = 25.4 bits (53), Expect = 7.4 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = -2 Query: 189 NPSXNTLVDNHTESMSSHVVHATCLSMVYFVWHTLLNCTIA 67 NPS ++ ++ +SH + TCL +VY+ W T + T++ Sbjct: 398 NPSRSS---HYRSVRNSHCLQTTCLYLVYY-WLTHKHVTVS 434 >SB_57242| Best HMM Match : Extensin_2 (HMM E-Value=2.4) Length = 308 Score = 25.0 bits (52), Expect = 9.7 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = -3 Query: 212 RIXMRFGIILPRTRLLTITPRA*AVTLY 129 RI FGI+LPR T PR V Y Sbjct: 3 RIPYSFGIVLPRPTRQTREPRTPLVVSY 30 >SB_29370| Best HMM Match : fn3 (HMM E-Value=0) Length = 579 Score = 25.0 bits (52), Expect = 9.7 Identities = 9/22 (40%), Positives = 12/22 (54%) Frame = +3 Query: 87 GYATQSIPWKDRSRVQRDCSCS 152 GYA + W+D S + SCS Sbjct: 195 GYAVSFVGWRDESIAREHLSCS 216 >SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) Length = 3369 Score = 25.0 bits (52), Expect = 9.7 Identities = 9/27 (33%), Positives = 12/27 (44%) Frame = +3 Query: 135 RDCSCSRCDCQQACSXKDYXEXHXYPC 215 +D +C CD Q C + H PC Sbjct: 2330 QDPNCGWCDSAQQCMPGNQTRPHQEPC 2356 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,811,669 Number of Sequences: 59808 Number of extensions: 119517 Number of successful extensions: 296 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 279 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 296 length of database: 16,821,457 effective HSP length: 62 effective length of database: 13,113,361 effective search space used: 301607303 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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