Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0899.Seq
         (259 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ130951-1|CAA10260.1|  189|Anopheles gambiae SG3 protein protein.     23   1.8  
AY334004-1|AAR01129.1|  194|Anopheles gambiae integrin protein.        22   3.2  
AY334003-1|AAR01128.1|  194|Anopheles gambiae integrin protein.        22   3.2  
AY334002-1|AAR01127.1|  194|Anopheles gambiae integrin protein.        22   3.2  
AY334001-1|AAR01126.1|  194|Anopheles gambiae integrin protein.        22   3.2  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    22   3.2  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    21   5.6  
AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.    21   5.6  
DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide...    21   7.4  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    21   7.4  

>AJ130951-1|CAA10260.1|  189|Anopheles gambiae SG3 protein protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 140 VTLYTRPVFPWYTLCGIP 87
           V ++ RP  PW+++ GIP
Sbjct: 73  VGIFGRPGRPWWSVPGIP 90


>AY334004-1|AAR01129.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +3

Query: 141 CSCSRCDCQQA 173
           C+C RC C ++
Sbjct: 42  CNCGRCSCDES 52


>AY334003-1|AAR01128.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +3

Query: 141 CSCSRCDCQQA 173
           C+C RC C ++
Sbjct: 42  CNCGRCSCDES 52


>AY334002-1|AAR01127.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +3

Query: 141 CSCSRCDCQQA 173
           C+C RC C ++
Sbjct: 42  CNCGRCSCDES 52


>AY334001-1|AAR01126.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +3

Query: 141 CSCSRCDCQQA 173
           C+C RC C ++
Sbjct: 42  CNCGRCSCDES 52


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +3

Query: 141 CSCSRCDCQQA 173
           C+C RC C ++
Sbjct: 618 CNCGRCSCDES 628


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 90  YATQSIPWKDRSRV 131
           YA + +PW+DR+ +
Sbjct: 928 YALRLLPWQDRNNL 941


>AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = +1

Query: 127 VYNVTAHALGVIVNKRVRGRIXPXRIXIRVEHVKHXKXR 243
           ++ +  H  GV+V+ + R          + EH++H   R
Sbjct: 117 LFQIGQHVRGVLVSIKSRMMAYTNDAVAKFEHLRHRTMR 155


>DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide F
           receptor protein.
          Length = 575

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 5/21 (23%), Positives = 13/21 (61%)
 Frame = -2

Query: 126 ATCLSMVYFVWHTLLNCTIAY 64
           +TC++++  +W   +  T+ Y
Sbjct: 208 STCITIIVLIWSFAIMVTMPY 228


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +3

Query: 18  LHVHESVQSWRHXXHHRQWCSSKG 89
           LH H S    RH  HH      +G
Sbjct: 422 LHNHRSGGGGRHHHHHHHSALVRG 445


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,729
Number of Sequences: 2352
Number of extensions: 3498
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 53
effective length of database: 439,323
effective search space used: 14058336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)