Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0899.Seq
         (259 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...   108   5e-25
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    27   1.4  
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    27   1.4  
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    27   1.4  
Z81491-1|CAB04019.1|  181|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p...    26   4.2  
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AF022975-9|AAB70669.1|  344|Caenorhabditis elegans Hypothetical ...    26   4.2  
U67949-2|AAB07560.2|  368|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    25   5.6  
Z68108-1|CAA92134.1|  194|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AF026206-4|AAK39309.1|  535|Caenorhabditis elegans Hypothetical ...    25   9.8  
AF026206-3|AAK39308.1|  518|Caenorhabditis elegans Hypothetical ...    25   9.8  
AF026206-2|AAT92054.1|  552|Caenorhabditis elegans Hypothetical ...    25   9.8  
AF022978-9|AAG24185.1|  353|Caenorhabditis elegans Seven tm rece...    25   9.8  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score =  108 bits (260), Expect = 5e-25
 Identities = 51/85 (60%), Positives = 59/85 (69%)
 Frame = +1

Query: 1   HGTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVR 180
           HG    STY    K GD+  I  NGA QKGMP K YHG+TGR++NVT  A+G+IVNKRVR
Sbjct: 22  HGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGRTGRIFNVTRGAVGIIVNKRVR 81

Query: 181 GRIXPXRIXIRVEHVKHXKXRQDFL 255
           G I P RI IR+EH+K  K R DFL
Sbjct: 82  GNILPKRINIRIEHIKPSKCRTDFL 106


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 122 PVFPWYTLCGIPF*TAPLPXXXXMSPTLXTFMYVEXGIVP 3
           PVFP Y+  G+P    PLP     +P     M V+  + P
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQP 265


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 122 PVFPWYTLCGIPF*TAPLPXXXXMSPTLXTFMYVEXGIVP 3
           PVFP Y+  G+P    PLP     +P     M V+  + P
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQP 265


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 122 PVFPWYTLCGIPF*TAPLPXXXXMSPTLXTFMYVEXGIVP 3
           PVFP Y+  G+P    PLP     +P     M V+  + P
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQP 259


>Z81491-1|CAB04019.1|  181|Caenorhabditis elegans Hypothetical
           protein D1086.1 protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 96  TQSIPW--KDRSRVQRDCSCSRCDCQQACSXKDY 191
           T+ + W   D+SR+  D  C++   ++ C  KD+
Sbjct: 120 TECVQWYFSDKSRMSTDQKCAQFKAKKQCIEKDF 153


>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 105 IPWKDRSRVQRDCSCSRCDC 164
           I WK R ++ R C CS  DC
Sbjct: 123 IAWK-RLKIMRQCCCSGSDC 141


>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 105 IPWKDRSRVQRDCSCSRCDC 164
           I WK R ++ R C CS  DC
Sbjct: 123 IAWK-RLKIMRQCCCSGSDC 141


>AF022975-9|AAB70669.1|  344|Caenorhabditis elegans Hypothetical
           protein K09C6.2 protein.
          Length = 344

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 105 IPWKDRSRVQRDCSCSRCDC 164
           I WK R ++ R C CS  DC
Sbjct: 123 IAWK-RFKIMRQCCCSGSDC 141


>U67949-2|AAB07560.2|  368|Caenorhabditis elegans Hypothetical
           protein F55A4.2 protein.
          Length = 368

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/48 (22%), Positives = 19/48 (39%)
 Frame = +3

Query: 24  VHESVQSWRHXXHHRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 167
           V+  + SWRH       C  +G     +   +   VQ D   ++  C+
Sbjct: 269 VNMDIDSWRHECDCIHPCDVRGIVAPGVAMGNAPSVQHDFFAAQIHCE 316


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
            protein F47C12.1 protein.
          Length = 1827

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 150  SRCDCQQACSXKDYXEXHXYPC*AC 224
            S  +C+QAC    Y      PC AC
Sbjct: 1610 SASECKQACKTGTYSNSGLEPCSAC 1634


>Z68108-1|CAA92134.1|  194|Caenorhabditis elegans Hypothetical
           protein T05A10.2 protein.
          Length = 194

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 135 VVHATCLSMVYFVWHTLLNCTIAY 64
           ++ A  L +V FVW+ L +CT  +
Sbjct: 85  MIAALILEIVAFVWNFLTSCTCCF 108


>AF026206-4|AAK39309.1|  535|Caenorhabditis elegans Hypothetical
           protein T28B4.1a protein.
          Length = 535

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 171 LVDNHTESMSSHVVHATCLSMVY 103
           + D H +++SS+  H  CL + Y
Sbjct: 246 ITDEHVDAISSNCAHLECLCVNY 268


>AF026206-3|AAK39308.1|  518|Caenorhabditis elegans Hypothetical
           protein T28B4.1b protein.
          Length = 518

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 171 LVDNHTESMSSHVVHATCLSMVY 103
           + D H +++SS+  H  CL + Y
Sbjct: 229 ITDEHVDAISSNCAHLECLCVNY 251


>AF026206-2|AAT92054.1|  552|Caenorhabditis elegans Hypothetical
           protein T28B4.1c protein.
          Length = 552

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 171 LVDNHTESMSSHVVHATCLSMVY 103
           + D H +++SS+  H  CL + Y
Sbjct: 263 ITDEHVDAISSNCAHLECLCVNY 285


>AF022978-9|AAG24185.1|  353|Caenorhabditis elegans Seven tm
           receptor protein 256 protein.
          Length = 353

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = -2

Query: 129 HATCLSMVYFVWHTLLNCTIAYDVXNVSN--FXHFHVRGXRNSS 4
           H    +  YF W     C IA  V  +S+    +F V+G R  S
Sbjct: 189 HDNSTTEQYFSWKAAKACIIAMGVITISSSIMLYFGVKGYRMMS 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,827,484
Number of Sequences: 27780
Number of extensions: 81546
Number of successful extensions: 255
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)