Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0899.Seq
         (259 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   1.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   2.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   5.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   5.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   5.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    19   9.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    19   9.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 66  RQWCSSKGYATQSIPWKDRSRV 131
           R  C   GY  +SI W+  +RV
Sbjct: 509 RVTCPVAGYPIESIVWERDTRV 530


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -2

Query: 225 DMLNTDX--DAXRXNPSXNTLVDNH-TESMSSHVVHATCLSMVYFVW 94
           +M NT+   DA   NP    L     T S  S++ H   LS  + VW
Sbjct: 311 NMENTEGADDASERNPRSAVLAAREITSSSCSYMAHEK-LSYAFSVW 356


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 96  WHTLLNCTIAYDVXNVSNFXHFHVRGXRN 10
           W + + C +AY+  N   +  F  RG  N
Sbjct: 56  WRSYVVCDVAYNNVNNWLWTPFIERGPAN 84


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 114 SMVYFVWHTLLNCTI 70
           S V+F W  LLN  I
Sbjct: 612 SAVWFAWGVLLNSGI 626


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +3

Query: 33  SVQSWRHXXHHRQWCSSKGYATQS 104
           SV  ++H   HR +  ++ Y   S
Sbjct: 24  SVAGYKHSRRHRDFTVAESYDASS 47


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 6/17 (35%), Positives = 8/17 (47%)
 Frame = +3

Query: 3   WNYSXLHVHESVQSWRH 53
           W Y  L+    + SW H
Sbjct: 166 WPYDILNCTIHIASWSH 182


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 8/43 (18%), Positives = 16/43 (37%)
 Frame = -2

Query: 129 HATCLSMVYFVWHTLLNCTIAYDVXNVSNFXHFHVRGXRNSSM 1
           H   L  V      +  CT+ ++          H++   +SS+
Sbjct: 245 HVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSV 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,298
Number of Sequences: 438
Number of extensions: 887
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4636803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)