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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0899.Seq
         (259 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60...   101   9e-23
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi...   101   9e-23
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi...   101   9e-23
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi...   101   9e-23
At5g25320.1 68418.m03004 ACT domain-containing protein contains ...    28   0.74 
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138...    27   1.3  
At1g76990.3 68414.m08966 ACT domain containing protein low simil...    27   1.7  
At1g76990.2 68414.m08965 ACT domain containing protein low simil...    27   1.7  
At1g76990.1 68414.m08964 ACT domain containing protein low simil...    27   1.7  
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative...    26   4.0  
At4g21490.1 68417.m03107 pyridine nucleotide-disulphide oxidored...    25   5.2  
At4g05020.1 68417.m00736 NADH dehydrogenase-related similar to a...    25   5.2  
At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein...    25   5.2  
At5g54000.1 68418.m06717 oxidoreductase, 2OG-Fe(II) oxygenase fa...    25   6.9  
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim...    25   6.9  
At2g20800.1 68415.m02446 pyridine nucleotide-disulphide oxidored...    25   9.1  

>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
           ribosomal protein L21 GI:3885884 from [Oryza sativa]
          Length = 164

 Score =  101 bits (241), Expect = 9e-23
 Identities = 44/83 (53%), Positives = 59/83 (71%)
 Frame = +1

Query: 4   GTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRG 183
           G IP STY++  KVGD   +  NGA+ KGMPHK YHG+TGR++NVT  A+GV VNK++  
Sbjct: 23  GYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGN 82

Query: 184 RIXPXRIXIRVEHVKHXKXRQDF 252
           RI   RI +RVEHV+  +  ++F
Sbjct: 83  RIIRKRIHVRVEHVQQSRCAEEF 105


>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
           to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
           [Arabidopsis thaliana]
          Length = 164

 Score =  101 bits (241), Expect = 9e-23
 Identities = 44/83 (53%), Positives = 59/83 (71%)
 Frame = +1

Query: 4   GTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRG 183
           G IP STY++  KVGD   +  NGA+ KGMPHK YHG+TGR++NVT  A+GV VNK++  
Sbjct: 23  GYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGN 82

Query: 184 RIXPXRIXIRVEHVKHXKXRQDF 252
           RI   RI +RVEHV+  +  ++F
Sbjct: 83  RIIRKRIHVRVEHVQQSRCAEEF 105


>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
           to ribosomal protein L21 (gb|L38826). ESTs
           gb|AA395597,gb|ATTS5197 come from this gene
          Length = 164

 Score =  101 bits (241), Expect = 9e-23
 Identities = 44/83 (53%), Positives = 59/83 (71%)
 Frame = +1

Query: 4   GTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRG 183
           G IP STY++  KVGD   +  NGA+ KGMPHK YHG+TGR++NVT  A+GV VNK++  
Sbjct: 23  GYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGN 82

Query: 184 RIXPXRIXIRVEHVKHXKXRQDF 252
           RI   RI +RVEHV+  +  ++F
Sbjct: 83  RIIRKRIHVRVEHVQQSRCAEEF 105


>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
           to L21 family of ribosomal protein; amino acid sequence
           is identical to F21M12.8
          Length = 164

 Score =  101 bits (241), Expect = 9e-23
 Identities = 44/83 (53%), Positives = 59/83 (71%)
 Frame = +1

Query: 4   GTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRG 183
           G IP STY++  KVGD   +  NGA+ KGMPHK YHG+TGR++NVT  A+GV VNK++  
Sbjct: 23  GYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGN 82

Query: 184 RIXPXRIXIRVEHVKHXKXRQDF 252
           RI   RI +RVEHV+  +  ++F
Sbjct: 83  RIIRKRIHVRVEHVQQSRCAEEF 105


>At5g25320.1 68418.m03004 ACT domain-containing protein contains
           Pfam ACT domain PF01842
          Length = 500

 Score = 28.3 bits (60), Expect = 0.74
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 75  CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 167
           C  +GY+  ++  KDR R+  D  C+  D Q
Sbjct: 291 CEERGYSIVTVKSKDRRRLMFDTICTLVDMQ 321


>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 672

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 88  GMPHKVYHGKTGRVYNVTAHALGVIVNK 171
           G P K Y+G  GR+    AHAL    NK
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNK 209


>At1g76990.3 68414.m08966 ACT domain containing protein low
           similarity to uridylyltransferase SP|P56884 from
           Rhizobium meliloti; contains Pfam ACT domain PF01842
          Length = 453

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 75  CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 167
           C  KGY+  ++  +DR ++  D  C+  D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289


>At1g76990.2 68414.m08965 ACT domain containing protein low
           similarity to uridylyltransferase SP|P56884 from
           Rhizobium meliloti; contains Pfam ACT domain PF01842
          Length = 453

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 75  CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 167
           C  KGY+  ++  +DR ++  D  C+  D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289


>At1g76990.1 68414.m08964 ACT domain containing protein low
           similarity to uridylyltransferase SP|P56884 from
           Rhizobium meliloti; contains Pfam ACT domain PF01842
          Length = 453

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 75  CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 167
           C  KGY+  ++  +DR ++  D  C+  D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289


>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
           adrenodoxin reductase, putative strong similarity to
           Ferredoxin--NADP reductase, chloroplast precursor (EC
           1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
           {Mesembryanthemum crystallinum} SP|P41343, {Spinacia
           oleracea} SP|P00455, [Capsicum annuum] GI:6899972
          Length = 369

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 46  GDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVN 168
           G    +I +G  + G PHKV      R+Y++ + ALG + N
Sbjct: 128 GQSVGVIADGIDKNGKPHKV------RLYSIASSALGDLGN 162


>At4g21490.1 68417.m03107 pyridine nucleotide-disulphide
           oxidoreductase family protein similar to GI:3718005
           alternative NADH-dehydrogenase {Yarrowia lipolytica};
           contains Pfam profile PF00070: Pyridine
           nucleotide-disulphide oxidoreductase
          Length = 568

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 45  WRHXXHHRQWCSSKGYATQSIPWKDRSRVQRD 140
           W    H  QW     YA++ + W+ R  V  D
Sbjct: 523 WVSIGHSSQWLWYSVYASKQVSWRTRVLVVSD 554


>At4g05020.1 68417.m00736 NADH dehydrogenase-related similar to
           alternative NADH-dehydrogenase [Yarrowia lipolytica]
           GI:3718005, 64 kDa mitochondrial NADH dehydrogenase
           [Neurospora crassa] GI:4753821; contains Pfam profile
           PF00070: Pyridine nucleotide-disulphide oxidoreductase
          Length = 582

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 45  WRHXXHHRQWCSSKGYATQSIPWKDRSRVQRD 140
           W    H  QW     YA++ + W+ R  V  D
Sbjct: 537 WVSIGHSSQWLWYSVYASKQVSWRTRVLVVSD 568


>At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein 1
           (SOL1) identical to CXC domain containing TSO1-like
           protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427;
           contains Pfam profile PF03638: Tesmin/TSO1-like CXC
           domain; supporting cDNA
           gi|7767426|gb|AF205142.1|AF205142
          Length = 609

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 114 KDRSRVQRDCSCSRCDCQQACSXKDYXE 197
           K     + D SC RC+C+++   K Y E
Sbjct: 316 KSEQSGEGDSSCKRCNCKKSKCLKLYCE 343


>At5g54000.1 68418.m06717 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to  Flavonol synthase (EC
           1.14.11.-) (FLS) from Lisianthus russellianus] {Eustoma
           grandiflorum} [SP|Q9M547], Leucoanthocyanidin
           dioxygenase (LDOX) (Leucoanthocyanidin hydroxylase)
           (Anthocyanidin synthase) from Malus spp. [SP|P51091];
           contains Pfam profile PF03171: oxidoreductase,
           2OG-Fe(II) oxygenase family
          Length = 349

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 43  VGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVT 141
           VGD   ++ NG  +  +   V +GK  R+Y  T
Sbjct: 266 VGDTMEVMSNGIYKSPVHRVVLNGKKERIYVAT 298


>At5g41240.1 68418.m05011 glutathione S-transferase, putative
           similar to glutathione S-transferase, GST 10b
           GB:CAA10662 [Arabidopsis thaliana] 37349.
          Length = 591

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 42  SWRHXXHHRQWCSS 83
           +WR   H+++WCS+
Sbjct: 385 AWRELRHNKKWCST 398


>At2g20800.1 68415.m02446 pyridine nucleotide-disulphide
           oxidoreductase family protein similar to GI:3718005
           alternative NADH-dehydrogenase {Yarrowia lipolytica} ;
           contains Pfam profile PF00070: Pyridine
           nucleotide-disulphide oxidoreductase
          Length = 582

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 45  WRHXXHHRQWCSSKGYATQSIPWKDRSRVQRD 140
           W    H  QW     YA++ + W+ R  V  D
Sbjct: 537 WVSIGHSSQWLWYSVYASKLVSWRTRMLVISD 568


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,523,426
Number of Sequences: 28952
Number of extensions: 73401
Number of successful extensions: 214
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 12,070,560
effective HSP length: 64
effective length of database: 10,217,632
effective search space used: 214570272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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