Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0899.Seq
(259 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 101 9e-23
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 101 9e-23
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 101 9e-23
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 101 9e-23
At5g25320.1 68418.m03004 ACT domain-containing protein contains ... 28 0.74
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138... 27 1.3
At1g76990.3 68414.m08966 ACT domain containing protein low simil... 27 1.7
At1g76990.2 68414.m08965 ACT domain containing protein low simil... 27 1.7
At1g76990.1 68414.m08964 ACT domain containing protein low simil... 27 1.7
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative... 26 4.0
At4g21490.1 68417.m03107 pyridine nucleotide-disulphide oxidored... 25 5.2
At4g05020.1 68417.m00736 NADH dehydrogenase-related similar to a... 25 5.2
At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein... 25 5.2
At5g54000.1 68418.m06717 oxidoreductase, 2OG-Fe(II) oxygenase fa... 25 6.9
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 25 6.9
At2g20800.1 68415.m02446 pyridine nucleotide-disulphide oxidored... 25 9.1
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 101 bits (241), Expect = 9e-23
Identities = 44/83 (53%), Positives = 59/83 (71%)
Frame = +1
Query: 4 GTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRG 183
G IP STY++ KVGD + NGA+ KGMPHK YHG+TGR++NVT A+GV VNK++
Sbjct: 23 GYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGN 82
Query: 184 RIXPXRIXIRVEHVKHXKXRQDF 252
RI RI +RVEHV+ + ++F
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEF 105
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 101 bits (241), Expect = 9e-23
Identities = 44/83 (53%), Positives = 59/83 (71%)
Frame = +1
Query: 4 GTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRG 183
G IP STY++ KVGD + NGA+ KGMPHK YHG+TGR++NVT A+GV VNK++
Sbjct: 23 GYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGN 82
Query: 184 RIXPXRIXIRVEHVKHXKXRQDF 252
RI RI +RVEHV+ + ++F
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEF 105
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 101 bits (241), Expect = 9e-23
Identities = 44/83 (53%), Positives = 59/83 (71%)
Frame = +1
Query: 4 GTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRG 183
G IP STY++ KVGD + NGA+ KGMPHK YHG+TGR++NVT A+GV VNK++
Sbjct: 23 GYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGN 82
Query: 184 RIXPXRIXIRVEHVKHXKXRQDF 252
RI RI +RVEHV+ + ++F
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEF 105
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 101 bits (241), Expect = 9e-23
Identities = 44/83 (53%), Positives = 59/83 (71%)
Frame = +1
Query: 4 GTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRG 183
G IP STY++ KVGD + NGA+ KGMPHK YHG+TGR++NVT A+GV VNK++
Sbjct: 23 GYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGN 82
Query: 184 RIXPXRIXIRVEHVKHXKXRQDF 252
RI RI +RVEHV+ + ++F
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEF 105
>At5g25320.1 68418.m03004 ACT domain-containing protein contains
Pfam ACT domain PF01842
Length = 500
Score = 28.3 bits (60), Expect = 0.74
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 75 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 167
C +GY+ ++ KDR R+ D C+ D Q
Sbjct: 291 CEERGYSIVTVKSKDRRRLMFDTICTLVDMQ 321
>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 672
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 88 GMPHKVYHGKTGRVYNVTAHALGVIVNK 171
G P K Y+G GR+ AHAL NK
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNK 209
>At1g76990.3 68414.m08966 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 75 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 167
C KGY+ ++ +DR ++ D C+ D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289
>At1g76990.2 68414.m08965 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 75 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 167
C KGY+ ++ +DR ++ D C+ D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289
>At1g76990.1 68414.m08964 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 75 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 167
C KGY+ ++ +DR ++ D C+ D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289
>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455, [Capsicum annuum] GI:6899972
Length = 369
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 46 GDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVN 168
G +I +G + G PHKV R+Y++ + ALG + N
Sbjct: 128 GQSVGVIADGIDKNGKPHKV------RLYSIASSALGDLGN 162
>At4g21490.1 68417.m03107 pyridine nucleotide-disulphide
oxidoreductase family protein similar to GI:3718005
alternative NADH-dehydrogenase {Yarrowia lipolytica};
contains Pfam profile PF00070: Pyridine
nucleotide-disulphide oxidoreductase
Length = 568
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +3
Query: 45 WRHXXHHRQWCSSKGYATQSIPWKDRSRVQRD 140
W H QW YA++ + W+ R V D
Sbjct: 523 WVSIGHSSQWLWYSVYASKQVSWRTRVLVVSD 554
>At4g05020.1 68417.m00736 NADH dehydrogenase-related similar to
alternative NADH-dehydrogenase [Yarrowia lipolytica]
GI:3718005, 64 kDa mitochondrial NADH dehydrogenase
[Neurospora crassa] GI:4753821; contains Pfam profile
PF00070: Pyridine nucleotide-disulphide oxidoreductase
Length = 582
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +3
Query: 45 WRHXXHHRQWCSSKGYATQSIPWKDRSRVQRD 140
W H QW YA++ + W+ R V D
Sbjct: 537 WVSIGHSSQWLWYSVYASKQVSWRTRVLVVSD 568
>At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein 1
(SOL1) identical to CXC domain containing TSO1-like
protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427;
contains Pfam profile PF03638: Tesmin/TSO1-like CXC
domain; supporting cDNA
gi|7767426|gb|AF205142.1|AF205142
Length = 609
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 114 KDRSRVQRDCSCSRCDCQQACSXKDYXE 197
K + D SC RC+C+++ K Y E
Sbjct: 316 KSEQSGEGDSSCKRCNCKKSKCLKLYCE 343
>At5g54000.1 68418.m06717 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to Flavonol synthase (EC
1.14.11.-) (FLS) from Lisianthus russellianus] {Eustoma
grandiflorum} [SP|Q9M547], Leucoanthocyanidin
dioxygenase (LDOX) (Leucoanthocyanidin hydroxylase)
(Anthocyanidin synthase) from Malus spp. [SP|P51091];
contains Pfam profile PF03171: oxidoreductase,
2OG-Fe(II) oxygenase family
Length = 349
Score = 25.0 bits (52), Expect = 6.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 43 VGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVT 141
VGD ++ NG + + V +GK R+Y T
Sbjct: 266 VGDTMEVMSNGIYKSPVHRVVLNGKKERIYVAT 298
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 25.0 bits (52), Expect = 6.9
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +3
Query: 42 SWRHXXHHRQWCSS 83
+WR H+++WCS+
Sbjct: 385 AWRELRHNKKWCST 398
>At2g20800.1 68415.m02446 pyridine nucleotide-disulphide
oxidoreductase family protein similar to GI:3718005
alternative NADH-dehydrogenase {Yarrowia lipolytica} ;
contains Pfam profile PF00070: Pyridine
nucleotide-disulphide oxidoreductase
Length = 582
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +3
Query: 45 WRHXXHHRQWCSSKGYATQSIPWKDRSRVQRD 140
W H QW YA++ + W+ R V D
Sbjct: 537 WVSIGHSSQWLWYSVYASKLVSWRTRMLVISD 568
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,523,426
Number of Sequences: 28952
Number of extensions: 73401
Number of successful extensions: 214
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 12,070,560
effective HSP length: 64
effective length of database: 10,217,632
effective search space used: 214570272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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