BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0899.Seq (259 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 101 9e-23 At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 101 9e-23 At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 101 9e-23 At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 101 9e-23 At5g25320.1 68418.m03004 ACT domain-containing protein contains ... 28 0.74 At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138... 27 1.3 At1g76990.3 68414.m08966 ACT domain containing protein low simil... 27 1.7 At1g76990.2 68414.m08965 ACT domain containing protein low simil... 27 1.7 At1g76990.1 68414.m08964 ACT domain containing protein low simil... 27 1.7 At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative... 26 4.0 At4g21490.1 68417.m03107 pyridine nucleotide-disulphide oxidored... 25 5.2 At4g05020.1 68417.m00736 NADH dehydrogenase-related similar to a... 25 5.2 At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein... 25 5.2 At5g54000.1 68418.m06717 oxidoreductase, 2OG-Fe(II) oxygenase fa... 25 6.9 At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 25 6.9 At2g20800.1 68415.m02446 pyridine nucleotide-disulphide oxidored... 25 9.1 >At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S ribosomal protein L21 GI:3885884 from [Oryza sativa] Length = 164 Score = 101 bits (241), Expect = 9e-23 Identities = 44/83 (53%), Positives = 59/83 (71%) Frame = +1 Query: 4 GTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRG 183 G IP STY++ KVGD + NGA+ KGMPHK YHG+TGR++NVT A+GV VNK++ Sbjct: 23 GYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGN 82 Query: 184 RIXPXRIXIRVEHVKHXKXRQDF 252 RI RI +RVEHV+ + ++F Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEF 105 >At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from [Arabidopsis thaliana] Length = 164 Score = 101 bits (241), Expect = 9e-23 Identities = 44/83 (53%), Positives = 59/83 (71%) Frame = +1 Query: 4 GTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRG 183 G IP STY++ KVGD + NGA+ KGMPHK YHG+TGR++NVT A+GV VNK++ Sbjct: 23 GYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGN 82 Query: 184 RIXPXRIXIRVEHVKHXKXRQDF 252 RI RI +RVEHV+ + ++F Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEF 105 >At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar to ribosomal protein L21 (gb|L38826). ESTs gb|AA395597,gb|ATTS5197 come from this gene Length = 164 Score = 101 bits (241), Expect = 9e-23 Identities = 44/83 (53%), Positives = 59/83 (71%) Frame = +1 Query: 4 GTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRG 183 G IP STY++ KVGD + NGA+ KGMPHK YHG+TGR++NVT A+GV VNK++ Sbjct: 23 GYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGN 82 Query: 184 RIXPXRIXIRVEHVKHXKXRQDF 252 RI RI +RVEHV+ + ++F Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEF 105 >At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar to L21 family of ribosomal protein; amino acid sequence is identical to F21M12.8 Length = 164 Score = 101 bits (241), Expect = 9e-23 Identities = 44/83 (53%), Positives = 59/83 (71%) Frame = +1 Query: 4 GTIPXSTYMKVXKVGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRG 183 G IP STY++ KVGD + NGA+ KGMPHK YHG+TGR++NVT A+GV VNK++ Sbjct: 23 GYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGN 82 Query: 184 RIXPXRIXIRVEHVKHXKXRQDF 252 RI RI +RVEHV+ + ++F Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEF 105 >At5g25320.1 68418.m03004 ACT domain-containing protein contains Pfam ACT domain PF01842 Length = 500 Score = 28.3 bits (60), Expect = 0.74 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +3 Query: 75 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 167 C +GY+ ++ KDR R+ D C+ D Q Sbjct: 291 CEERGYSIVTVKSKDRRRLMFDTICTLVDMQ 321 >At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; Length = 672 Score = 27.5 bits (58), Expect = 1.3 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +1 Query: 88 GMPHKVYHGKTGRVYNVTAHALGVIVNK 171 G P K Y+G GR+ AHAL NK Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNK 209 >At1g76990.3 68414.m08966 ACT domain containing protein low similarity to uridylyltransferase SP|P56884 from Rhizobium meliloti; contains Pfam ACT domain PF01842 Length = 453 Score = 27.1 bits (57), Expect = 1.7 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = +3 Query: 75 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 167 C KGY+ ++ +DR ++ D C+ D Q Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289 >At1g76990.2 68414.m08965 ACT domain containing protein low similarity to uridylyltransferase SP|P56884 from Rhizobium meliloti; contains Pfam ACT domain PF01842 Length = 453 Score = 27.1 bits (57), Expect = 1.7 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = +3 Query: 75 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 167 C KGY+ ++ +DR ++ D C+ D Q Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289 >At1g76990.1 68414.m08964 ACT domain containing protein low similarity to uridylyltransferase SP|P56884 from Rhizobium meliloti; contains Pfam ACT domain PF01842 Length = 453 Score = 27.1 bits (57), Expect = 1.7 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = +3 Query: 75 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 167 C KGY+ ++ +DR ++ D C+ D Q Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289 >At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative / adrenodoxin reductase, putative strong similarity to Ferredoxin--NADP reductase, chloroplast precursor (EC 1.18.1.2) (FNR) from {Pisum sativum} SP|P10933, {Mesembryanthemum crystallinum} SP|P41343, {Spinacia oleracea} SP|P00455, [Capsicum annuum] GI:6899972 Length = 369 Score = 25.8 bits (54), Expect = 4.0 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +1 Query: 46 GDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVN 168 G +I +G + G PHKV R+Y++ + ALG + N Sbjct: 128 GQSVGVIADGIDKNGKPHKV------RLYSIASSALGDLGN 162 >At4g21490.1 68417.m03107 pyridine nucleotide-disulphide oxidoreductase family protein similar to GI:3718005 alternative NADH-dehydrogenase {Yarrowia lipolytica}; contains Pfam profile PF00070: Pyridine nucleotide-disulphide oxidoreductase Length = 568 Score = 25.4 bits (53), Expect = 5.2 Identities = 10/32 (31%), Positives = 14/32 (43%) Frame = +3 Query: 45 WRHXXHHRQWCSSKGYATQSIPWKDRSRVQRD 140 W H QW YA++ + W+ R V D Sbjct: 523 WVSIGHSSQWLWYSVYASKQVSWRTRVLVVSD 554 >At4g05020.1 68417.m00736 NADH dehydrogenase-related similar to alternative NADH-dehydrogenase [Yarrowia lipolytica] GI:3718005, 64 kDa mitochondrial NADH dehydrogenase [Neurospora crassa] GI:4753821; contains Pfam profile PF00070: Pyridine nucleotide-disulphide oxidoreductase Length = 582 Score = 25.4 bits (53), Expect = 5.2 Identities = 10/32 (31%), Positives = 14/32 (43%) Frame = +3 Query: 45 WRHXXHHRQWCSSKGYATQSIPWKDRSRVQRD 140 W H QW YA++ + W+ R V D Sbjct: 537 WVSIGHSSQWLWYSVYASKQVSWRTRVLVVSD 568 >At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein 1 (SOL1) identical to CXC domain containing TSO1-like protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427; contains Pfam profile PF03638: Tesmin/TSO1-like CXC domain; supporting cDNA gi|7767426|gb|AF205142.1|AF205142 Length = 609 Score = 25.4 bits (53), Expect = 5.2 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = +3 Query: 114 KDRSRVQRDCSCSRCDCQQACSXKDYXE 197 K + D SC RC+C+++ K Y E Sbjct: 316 KSEQSGEGDSSCKRCNCKKSKCLKLYCE 343 >At5g54000.1 68418.m06717 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to Flavonol synthase (EC 1.14.11.-) (FLS) from Lisianthus russellianus] {Eustoma grandiflorum} [SP|Q9M547], Leucoanthocyanidin dioxygenase (LDOX) (Leucoanthocyanidin hydroxylase) (Anthocyanidin synthase) from Malus spp. [SP|P51091]; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family Length = 349 Score = 25.0 bits (52), Expect = 6.9 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +1 Query: 43 VGDIXXIIGNGAVQKGMPHKVYHGKTGRVYNVT 141 VGD ++ NG + + V +GK R+Y T Sbjct: 266 VGDTMEVMSNGIYKSPVHRVVLNGKKERIYVAT 298 >At5g41240.1 68418.m05011 glutathione S-transferase, putative similar to glutathione S-transferase, GST 10b GB:CAA10662 [Arabidopsis thaliana] 37349. Length = 591 Score = 25.0 bits (52), Expect = 6.9 Identities = 6/14 (42%), Positives = 11/14 (78%) Frame = +3 Query: 42 SWRHXXHHRQWCSS 83 +WR H+++WCS+ Sbjct: 385 AWRELRHNKKWCST 398 >At2g20800.1 68415.m02446 pyridine nucleotide-disulphide oxidoreductase family protein similar to GI:3718005 alternative NADH-dehydrogenase {Yarrowia lipolytica} ; contains Pfam profile PF00070: Pyridine nucleotide-disulphide oxidoreductase Length = 582 Score = 24.6 bits (51), Expect = 9.1 Identities = 10/32 (31%), Positives = 14/32 (43%) Frame = +3 Query: 45 WRHXXHHRQWCSSKGYATQSIPWKDRSRVQRD 140 W H QW YA++ + W+ R V D Sbjct: 537 WVSIGHSSQWLWYSVYASKLVSWRTRMLVISD 568 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 4,523,426 Number of Sequences: 28952 Number of extensions: 73401 Number of successful extensions: 214 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 214 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 214 length of database: 12,070,560 effective HSP length: 64 effective length of database: 10,217,632 effective search space used: 214570272 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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