Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0898.Seq
(339 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellu... 107 5e-23
UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellul... 96 2e-19
UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Ze... 75 2e-13
UniRef50_Q8ZYQ4 Cluster: 30S ribosomal protein S12P; n=17; Archa... 67 6e-11
UniRef50_A3H7W0 Cluster: Protein splicing (Intein) site; n=4; ce... 60 1e-08
UniRef50_Q0W8G5 Cluster: 30S ribosomal protein S12P; n=20; cellu... 56 2e-07
UniRef50_Q5AAQ9 Cluster: Putative uncharacterized protein; n=1; ... 46 2e-04
UniRef50_Q8S6I4 Cluster: Putative 40s ribosomal protein S23; n=4... 46 2e-04
UniRef50_UPI00004CC6C0 Cluster: PREDICTED: hypothetical protein;... 41 0.005
UniRef50_A3B198 Cluster: Putative uncharacterized protein; n=1; ... 40 0.008
UniRef50_O70089 Cluster: 30S ribosomal protein S12; n=35; cellul... 32 2.9
UniRef50_A7HJP3 Cluster: FeoA family protein; n=1; Fervidobacter... 31 5.1
>UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellular
organisms|Rep: 40S ribosomal protein S23 - Homo sapiens
(Human)
Length = 143
Score = 107 bits (257), Expect = 5e-23
Identities = 52/65 (80%), Positives = 54/65 (83%)
Frame = -3
Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRK 50
K + AFVP DGC N IEE VLVA FGRKG AVGDIPGVRFKVVKVANVSLLALYK +K
Sbjct: 79 KKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 138
Query: 49 ERPRS 35
ERPRS
Sbjct: 139 ERPRS 143
Score = 54.4 bits (125), Expect = 5e-07
Identities = 27/34 (79%), Positives = 28/34 (82%)
Frame = -1
Query: 339 GGASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238
GGASHAKG VLEKVGV A QPNSAIR +RVQ I
Sbjct: 42 GGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 75
>UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellular
organisms|Rep: 40S ribosomal protein S23 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 145
Score = 95.9 bits (228), Expect = 2e-19
Identities = 45/65 (69%), Positives = 52/65 (80%)
Frame = -3
Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRK 50
K V AFVP DGC N ++E VL+A FGRKG A GDIPGVRFKVVKV+ VSLLAL+K +K
Sbjct: 81 KKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKK 140
Query: 49 ERPRS 35
E+PRS
Sbjct: 141 EKPRS 145
Score = 50.4 bits (115), Expect = 8e-06
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = -1
Query: 339 GGASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238
GG+SHAKG VLEK+G+ + QPNSAIR +RVQ I
Sbjct: 44 GGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLI 77
>UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Zea
mays|Rep: Putative 40S ribosomal protein - Zea mays
(Maize)
Length = 309
Score = 75.4 bits (177), Expect = 2e-13
Identities = 35/44 (79%), Positives = 40/44 (90%)
Frame = -3
Query: 166 VLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRKERPRS 35
VL+A FGRKG AVGDIPGVRFKVVKV+ VSLLAL+K +KE+PRS
Sbjct: 226 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 269
>UniRef50_Q8ZYQ4 Cluster: 30S ribosomal protein S12P; n=17;
Archaea|Rep: 30S ribosomal protein S12P - Pyrobaculum
aerophilum
Length = 147
Score = 67.3 bits (157), Expect = 6e-11
Identities = 32/64 (50%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = -3
Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGR-KGXAVGDIPGVRFKVVKVANVSLLALYKXR 53
K V AFVP DG N+I E V++ G +G ++GDIPGVRFKV+KV VSL A+++ +
Sbjct: 82 KVVTAFVPLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGK 141
Query: 52 KERP 41
K++P
Sbjct: 142 KQKP 145
Score = 41.1 bits (92), Expect = 0.005
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = -1
Query: 336 GASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238
GA A+G VLEKVGV A +PN+A+R +RVQ +
Sbjct: 46 GAPMARGIVLEKVGVEARKPNAAVRKCVRVQLV 78
>UniRef50_A3H7W0 Cluster: Protein splicing (Intein) site; n=4;
cellular organisms|Rep: Protein splicing (Intein) site -
Caldivirga maquilingensis IC-167
Length = 661
Score = 60.1 bits (139), Expect = 1e-08
Identities = 32/64 (50%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = -3
Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGR-KGXAVGDIPGVRFKVVKVANVSLLALYKXR 53
K V AFVP DG N I E V++ G +G A GD+PGVRFKV KV VSL A+ +
Sbjct: 596 KVVTAFVPWDGGLNLINEHDEVIIERIGGPEGRAYGDLPGVRFKVTKVNGVSLKAILLGK 655
Query: 52 KERP 41
K++P
Sbjct: 656 KQKP 659
Score = 35.9 bits (79), Expect = 0.18
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = -1
Query: 336 GASHAKGXVLEKVGVXAXQPNSAIR 262
GA A+G VLEKVGV A +PN+A+R
Sbjct: 46 GAPMARGIVLEKVGVEARKPNAAVR 70
>UniRef50_Q0W8G5 Cluster: 30S ribosomal protein S12P; n=20; cellular
organisms|Rep: 30S ribosomal protein S12P - Uncultured
methanogenic archaeon RC-I
Length = 142
Score = 55.6 bits (128), Expect = 2e-07
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = -3
Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFG-RKGXAVGDIPGVRFKVVKVANVSLLALYKXR 53
+ + AF P DG N I+E V + G R G + GDIPGVRF+V KV +VSL + +
Sbjct: 77 RQITAFCPGDGAINFIDEHDEVTIEGIGGRMGGSYGDIPGVRFRVFKVNDVSLEEMVAGK 136
Query: 52 KERP 41
+++P
Sbjct: 137 RDKP 140
Score = 46.8 bits (106), Expect = 1e-04
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = -1
Query: 336 GASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238
GA AKG VLEKVGV A QPNSAIR +R+Q I
Sbjct: 41 GAPQAKGIVLEKVGVEAKQPNSAIRKCIRIQLI 73
>UniRef50_Q5AAQ9 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 102
Score = 46.0 bits (104), Expect = 2e-04
Identities = 27/66 (40%), Positives = 28/66 (42%)
Frame = +3
Query: 27 YTYDLGRSXXXXXXXXXXXXXXXXXXKRTPGMSPTAXPLRPNXATSTXXXSSMWFXQPSR 206
Y YDLG S TPG+SP A PL P A T SS F QPS
Sbjct: 3 YIYDLGFSFFSFHKANKETPETLTTLNLTPGISPLALPLLPKPANKTSSFSSTKFKQPSF 62
Query: 207 GTNAXT 224
GT A T
Sbjct: 63 GTKAVT 68
>UniRef50_Q8S6I4 Cluster: Putative 40s ribosomal protein S23; n=4;
Oryza sativa|Rep: Putative 40s ribosomal protein S23 -
Oryza sativa (Rice)
Length = 301
Score = 45.6 bits (103), Expect = 2e-04
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = -1
Query: 336 GASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238
G+SHAKG VLEK+G+ A QPNSAI RVQ +
Sbjct: 113 GSSHAKGIVLEKIGIEAKQPNSAICKCARVQLV 145
>UniRef50_UPI00004CC6C0 Cluster: PREDICTED: hypothetical protein;
n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
Mus musculus
Length = 143
Score = 41.1 bits (92), Expect = 0.005
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +2
Query: 47 LLSLF-VESEERHVGYFYHLKTNSGNVTDGXTFTTEXRH*YXXXFFDVVXATVTGDE 214
LL+ F ++S++R++GYF HLK +S ++T TF+T+ + + F + V A + G E
Sbjct: 3 LLAQFDLQSQQRNIGYFNHLKEDSRDITYSMTFSTKSSN-WIIIFLNEVQAAIIGHE 58
>UniRef50_A3B198 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 128
Score = 40.3 bits (90), Expect = 0.008
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = -3
Query: 166 VLVAXFGRKGXAVGDIPGVRFKVVK 92
VL++ FG KG AVGDI GVRF+VVK
Sbjct: 69 VLISGFGHKGHAVGDIRGVRFEVVK 93
>UniRef50_O70089 Cluster: 30S ribosomal protein S12; n=35; cellular
organisms|Rep: 30S ribosomal protein S12 - Aquifex
aeolicus
Length = 128
Score = 31.9 bits (69), Expect = 2.9
Identities = 17/46 (36%), Positives = 30/46 (65%)
Frame = -3
Query: 223 VXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVA 86
V A++P +G ++++E VLV +G V D+PGVR+K+++ A
Sbjct: 63 VTAYIPGEG--HNLQEHSIVLV-----RGGRVKDLPGVRYKIIRGA 101
>UniRef50_A7HJP3 Cluster: FeoA family protein; n=1; Fervidobacterium
nodosum Rt17-B1|Rep: FeoA family protein -
Fervidobacterium nodosum Rt17-B1
Length = 158
Score = 31.1 bits (67), Expect = 5.1
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = -3
Query: 184 IEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYK 59
I E VL + K AVG +PGVR +V+K A + LYK
Sbjct: 11 IVEVKRVLPSDISPKLRAVGILPGVRIEVIKAAPMGDPRLYK 52
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,828,896
Number of Sequences: 1657284
Number of extensions: 3160564
Number of successful extensions: 4440
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4437
length of database: 575,637,011
effective HSP length: 88
effective length of database: 429,796,019
effective search space used: 10315104456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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