Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0898.Seq
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...    89   2e-19
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...    89   2e-19

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 88.6 bits (210), Expect = 2e-19
 Identities = 41/65 (63%), Positives = 49/65 (75%)
 Frame = -3

Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRK 50
           K V AFVP DGC N ++E   VL++ FGRKG A GDIPGVRFKVVKVA V L AL+  +K
Sbjct: 79  KKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKK 138

Query: 49  ERPRS 35
           E+PR+
Sbjct: 139 EKPRA 143



 Score = 51.6 bits (118), Expect = 3e-08
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = -1

Query: 339 GGASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238
           GG+SHAKG V+EK+GV A QPNSAIR  +RVQ I
Sbjct: 42  GGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLI 75


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 88.6 bits (210), Expect = 2e-19
 Identities = 41/65 (63%), Positives = 49/65 (75%)
 Frame = -3

Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRK 50
           K V AFVP DGC N ++E   VL++ FGRKG A GDIPGVRFKVVKVA V L AL+  +K
Sbjct: 79  KKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKK 138

Query: 49  ERPRS 35
           E+PR+
Sbjct: 139 EKPRA 143



 Score = 51.6 bits (118), Expect = 3e-08
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = -1

Query: 339 GGASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238
           GG+SHAKG V+EK+GV A QPNSAIR  +RVQ I
Sbjct: 42  GGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLI 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,000,133
Number of Sequences: 5004
Number of extensions: 12401
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)