BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0898.Seq (339 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 100 3e-22 01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 100 3e-22 10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 46 1e-05 05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 40 4e-04 03_03_0046 + 14040331-14040801,14040915-14041050,14041159-140412... 29 0.93 >03_06_0466 - 34134138-34134278,34134355-34134481,34134558-34134713, 34135831-34135835 Length = 142 Score = 100 bits (240), Expect = 3e-22 Identities = 47/65 (72%), Positives = 53/65 (81%) Frame = -3 Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRK 50 K + AFVP DGC N IEE VL+A FGRKG AVGDIPGVRFKVVKV+ VSLLAL+K +K Sbjct: 78 KKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137 Query: 49 ERPRS 35 E+PRS Sbjct: 138 EKPRS 142 Score = 48.8 bits (111), Expect = 1e-06 Identities = 22/33 (66%), Positives = 26/33 (78%) Frame = -1 Query: 336 GASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238 G+SHAKG VLEK+G+ A QPNSAIR RVQ + Sbjct: 42 GSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74 >01_06_1253 - 35753546-35753686,35753759-35753885,35753970-35754125, 35754761-35754853,35757132-35757265,35757339-35757465, 35757550-35757705,35758321-35758325 Length = 312 Score = 100 bits (240), Expect = 3e-22 Identities = 47/65 (72%), Positives = 53/65 (81%) Frame = -3 Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRK 50 K + AFVP DGC N IEE VL+A FGRKG AVGDIPGVRFKVVKV+ VSLLAL+K +K Sbjct: 248 KKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 307 Query: 49 ERPRS 35 E+PRS Sbjct: 308 EKPRS 312 Score = 97.1 bits (231), Expect = 3e-21 Identities = 45/63 (71%), Positives = 51/63 (80%) Frame = -3 Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRK 50 K + AFVP DGC N IEE VL+A FGRKG AVGDIPGVRFKVVKV+ VSLLAL+K +K Sbjct: 78 KKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137 Query: 49 ERP 41 E+P Sbjct: 138 EKP 140 Score = 48.8 bits (111), Expect = 1e-06 Identities = 22/33 (66%), Positives = 26/33 (78%) Frame = -1 Query: 336 GASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238 G+SHAKG VLEK+G+ A QPNSAIR RVQ + Sbjct: 42 GSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74 Score = 48.8 bits (111), Expect = 1e-06 Identities = 22/33 (66%), Positives = 26/33 (78%) Frame = -1 Query: 336 GASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238 G+SHAKG VLEK+G+ A QPNSAIR RVQ + Sbjct: 212 GSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 244 >10_06_0053 - 10110617-10111271,10112023-10112417,10112565-10112650, 10112973-10113021,10114164-10114290,10114372-10114526, 10114730-10114948 Length = 561 Score = 45.6 bits (103), Expect = 1e-05 Identities = 21/33 (63%), Positives = 25/33 (75%) Frame = -1 Query: 336 GASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238 G+SHAKG VLEK+G+ A QPNSAI RVQ + Sbjct: 113 GSSHAKGIVLEKIGIEAKQPNSAICKCARVQLV 145 Score = 29.1 bits (62), Expect = 0.93 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -3 Query: 229 KXVXAFVPRDGCXNHIEE 176 K + AFVP DGC N I+E Sbjct: 149 KKIAAFVPNDGCLNFIKE 166 >05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833, 7467254-7467294 Length = 128 Score = 40.3 bits (90), Expect = 4e-04 Identities = 18/25 (72%), Positives = 21/25 (84%) Frame = -3 Query: 166 VLVAXFGRKGXAVGDIPGVRFKVVK 92 VL++ FG KG AVGDI GVRF+VVK Sbjct: 69 VLISGFGHKGHAVGDIRGVRFEVVK 93 >03_03_0046 + 14040331-14040801,14040915-14041050,14041159-14041295, 14041366-14041965 Length = 447 Score = 29.1 bits (62), Expect = 0.93 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%) Frame = -3 Query: 277 QFCHPHNAP----CTXHXXRKXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGV 110 QF HPH C R V F+PR NH+ + V R A+G G+ Sbjct: 165 QFRHPHLVKLLGYCCEDEERLLVYEFMPRGSLENHLFKRISATVPWGTRLKIAIGAAKGL 224 Query: 109 RF 104 F Sbjct: 225 AF 226 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,087,417 Number of Sequences: 37544 Number of extensions: 94334 Number of successful extensions: 149 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 144 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 149 length of database: 14,793,348 effective HSP length: 73 effective length of database: 12,052,636 effective search space used: 470052804 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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