Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0898.Seq
         (339 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347...   100   3e-22
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541...   100   3e-22
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126...    46   1e-05
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746...    40   4e-04
03_03_0046 + 14040331-14040801,14040915-14041050,14041159-140412...    29   0.93 

>03_06_0466 -
           34134138-34134278,34134355-34134481,34134558-34134713,
           34135831-34135835
          Length = 142

 Score =  100 bits (240), Expect = 3e-22
 Identities = 47/65 (72%), Positives = 53/65 (81%)
 Frame = -3

Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRK 50
           K + AFVP DGC N IEE   VL+A FGRKG AVGDIPGVRFKVVKV+ VSLLAL+K +K
Sbjct: 78  KKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137

Query: 49  ERPRS 35
           E+PRS
Sbjct: 138 EKPRS 142



 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = -1

Query: 336 GASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238
           G+SHAKG VLEK+G+ A QPNSAIR   RVQ +
Sbjct: 42  GSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74


>01_06_1253 -
           35753546-35753686,35753759-35753885,35753970-35754125,
           35754761-35754853,35757132-35757265,35757339-35757465,
           35757550-35757705,35758321-35758325
          Length = 312

 Score =  100 bits (240), Expect = 3e-22
 Identities = 47/65 (72%), Positives = 53/65 (81%)
 Frame = -3

Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRK 50
           K + AFVP DGC N IEE   VL+A FGRKG AVGDIPGVRFKVVKV+ VSLLAL+K +K
Sbjct: 248 KKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 307

Query: 49  ERPRS 35
           E+PRS
Sbjct: 308 EKPRS 312



 Score = 97.1 bits (231), Expect = 3e-21
 Identities = 45/63 (71%), Positives = 51/63 (80%)
 Frame = -3

Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRK 50
           K + AFVP DGC N IEE   VL+A FGRKG AVGDIPGVRFKVVKV+ VSLLAL+K +K
Sbjct: 78  KKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137

Query: 49  ERP 41
           E+P
Sbjct: 138 EKP 140



 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = -1

Query: 336 GASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238
           G+SHAKG VLEK+G+ A QPNSAIR   RVQ +
Sbjct: 42  GSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74



 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = -1

Query: 336 GASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238
           G+SHAKG VLEK+G+ A QPNSAIR   RVQ +
Sbjct: 212 GSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 244


>10_06_0053 -
           10110617-10111271,10112023-10112417,10112565-10112650,
           10112973-10113021,10114164-10114290,10114372-10114526,
           10114730-10114948
          Length = 561

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 21/33 (63%), Positives = 25/33 (75%)
 Frame = -1

Query: 336 GASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238
           G+SHAKG VLEK+G+ A QPNSAI    RVQ +
Sbjct: 113 GSSHAKGIVLEKIGIEAKQPNSAICKCARVQLV 145



 Score = 29.1 bits (62), Expect = 0.93
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 229 KXVXAFVPRDGCXNHIEE 176
           K + AFVP DGC N I+E
Sbjct: 149 KKIAAFVPNDGCLNFIKE 166


>05_03_0026 +
           7466017-7466034,7466340-7466405,7466572-7466833,
           7467254-7467294
          Length = 128

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -3

Query: 166 VLVAXFGRKGXAVGDIPGVRFKVVK 92
           VL++ FG KG AVGDI GVRF+VVK
Sbjct: 69  VLISGFGHKGHAVGDIRGVRFEVVK 93


>03_03_0046 +
           14040331-14040801,14040915-14041050,14041159-14041295,
           14041366-14041965
          Length = 447

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
 Frame = -3

Query: 277 QFCHPHNAP----CTXHXXRKXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGV 110
           QF HPH       C     R  V  F+PR    NH+ +     V    R   A+G   G+
Sbjct: 165 QFRHPHLVKLLGYCCEDEERLLVYEFMPRGSLENHLFKRISATVPWGTRLKIAIGAAKGL 224

Query: 109 RF 104
            F
Sbjct: 225 AF 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,087,417
Number of Sequences: 37544
Number of extensions: 94334
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)